Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   0.73 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    26   3.9  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.8  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   6.8  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 300 SSMWKDFKKSTVIYHTSLKSSNFTLLNAV 386
           S+M K    +T+++H  LK++ FT+ NAV
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKNAV 98


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 300 SSMWKDFKKSTVIYHTSLKSSNFTLLNAV 386
           S+M K    +T+++H  LK++ FT+  AV
Sbjct: 70  SAMKKIEDDNTLVFHVHLKANKFTIKEAV 98


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  KFSRKTKQFLTMLQKIIRLKYFRIFCYLKSY 152
           K S++  Q +   QK+ R KY  ++C  +++
Sbjct: 37  KISQEEMQIIRATQKLARTKYMTLYCIPRAW 67


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 41  VWTLKG*VQQKNKTIFDDASENNSIKI 121
           +W   G  ++KNKT +  A +NNSI I
Sbjct: 49  IWKQPG-TERKNKTKWRKAMQNNSIPI 74


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 216 LNVEDRTKNCLSVFQKCPLKRR*LRWRHSSMWKDFKKSTVIYHTSLKSSNFTLLNAVIFI 395
           L VE  TK+       C  KR      +    + FKK ++I +  +KS    L   V   
Sbjct: 42  LAVERMTKDAAGYVYGCAGKRE----TYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQ 97

Query: 396 SFPFP-ALA 419
            +PFP ALA
Sbjct: 98  KYPFPIALA 106


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 250 LRQFLVLSSTFKTIRYILRDFIVLCD*TAF-KFW 152
           +R F    S+F T   ILRDFI+      F K W
Sbjct: 50  VRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIW 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,404
Number of Sequences: 5004
Number of extensions: 42712
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)