Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    31   0.56 
05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214...    29   3.0  
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    27   6.9  

>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 69  RKTKQFLTMLQKIIRLKYFRIFC 137
           RK KQF T L+K IR  YF I C
Sbjct: 190 RKVKQFFTRLEKDIRFNYFWIRC 212


>05_06_0041 -
           25120961-25121005,25121143-25121194,25121429-25121496,
           25122167-25122220,25122473-25122541,25122655-25122714,
           25122876-25123048,25123847-25123920,25124472-25124585,
           25124688-25124754,25124840-25124904,25125504-25125583,
           25125689-25125733,25126235-25126300,25126746-25126901,
           25127292-25127516,25127630-25127672,25127997-25128040,
           25128191-25128263,25130335-25130414
          Length = 550

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 98  KHRQKLFCFSAELNPLGSTRIR*TDNNF 15
           KH++KLF F       GST++R  D+NF
Sbjct: 517 KHQEKLFQFDVYQLANGSTKLRICDSNF 544


>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 180 NTMKSRNMYLIVLNVEDRTKNCLSVFQKCPLKRR*LRWRHSSMWKDFKKSTVIYHTSL 353
           N ++S++M L+       +K+ +  +   P  RR LR +    WK+   ++ I  TSL
Sbjct: 170 NAIQSQSMRLVQRTNMGPSKSRILRYPDDPYDRRWLRMQLDRTWKNLSTASTIKDTSL 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,847,818
Number of Sequences: 37544
Number of extensions: 239609
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)