Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 253 TLRQFLVLSSTFKTIRYI 200
           T  Q + L + FKT RY+
Sbjct: 16  TYEQLVALENKFKTTRYL 33


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 201 YYVISLYYVIRQHSS 157
           YYV+SL+Y I ++S+
Sbjct: 276 YYVMSLWYWIDRNSA 290


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 198 NMYLIVLNVEDRTKNC 245
           N  L VLN E RT NC
Sbjct: 864 NDALFVLNGETRTINC 879


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 424 NSASAGNGNDMNITALSRVKLL 359
           ++   G GN + ITALS + +L
Sbjct: 603 SAGEEGLGNSLAITALSSILVL 624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,247
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)