Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331G01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   5.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 428 TLDIYIEYSLRAVIACRA*GRLPFRHRY-FFHRYILNTFIQIKSW 297
           T D  IEYS       +    L  R  Y  FH YI +  I + SW
Sbjct: 188 TTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVVMSW 232


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 347 YFFHRYILNTFIQIKSW 297
           Y FH YI    I I SW
Sbjct: 247 YLFHTYIPTCLIVIMSW 263


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 163 FVNEIVYTAYGQQF 204
           FVN ++YT +  +F
Sbjct: 671 FVNPVIYTVFNPEF 684


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 119 FNFSLGHTNPNHWPSG 72
           +NF L   NP H P G
Sbjct: 58  YNFQLKPYNPEHKPPG 73


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 119 FNFSLGHTNPNHWPSG 72
           +NF L   NP H P G
Sbjct: 59  YNFQLKPYNPEHKPPG 74


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 106 RLKLKLGKI*KFNTPNQIFFVN 171
           ++KLKL ++   N  NQI   N
Sbjct: 53  KIKLKLSQLIDVNLKNQIMTTN 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,166
Number of Sequences: 438
Number of extensions: 2806
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)