Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F10f
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.63 
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    25   2.5  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   3.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   4.4  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    24   5.9  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    24   5.9  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   5.9  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    24   7.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54   LVVSAWCYAL*-LSPIWPRNNGMSTCQTPNKDSKTCNEK*PRLMNRSSPLLLHDNARPHT 230
            L+V  WC  +  L+ +W  +NG        + SK   +    L+NR   LL+  N   + 
Sbjct: 973  LLVYKWCQGINNLTDVWETSNGECNVLMETRLSKVFEKVDLTLLNRLMSLLMDTNLASYA 1032

Query: 231  ARETVLTL 254
            + +  + L
Sbjct: 1033 SAKNNVVL 1040


>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 220 LALSWSNNGEDRFMSRGYFSLQVLLSLFGVWHVDMP 113
           +AL   +NGE +F++ GY +     S+    HV +P
Sbjct: 18  IALWQLHNGEAKFLAEGYENFDYAFSMHLRKHVRLP 53


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 129 QTPNKDSKTCNEK*PRLMNRSSPLLLHDNARPHTARETVLTLQEL 263
           Q   +  KT  ++   L NR+   + + N++P T R  +  +  L
Sbjct: 231 QDDKQKPKTTQQEHYNLRNRNQATITNSNSKPQTRRSKIFVISLL 275


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 199 NGEDRFMSRGYFSLQVLLSLFG 134
           N +D + S+GY S Q+ + +FG
Sbjct: 314 NYQDFYFSKGYNSYQIEIQMFG 335


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 168 IFHCKFCYPCLE 133
           IFHC+ C+ C E
Sbjct: 131 IFHCRVCHTCRE 142


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 58  WSQHGVMHYNFLRSGQGITACLRAKLQTRIAKLAMKNSP 174
           W+++  +  N +  G  ++  ++ + +T IAK  ++NSP
Sbjct: 262 WNENAGVFINNIYFGFSLSDAMKFENETFIAKKILENSP 300


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 222 PHTARETVLTLQELQLDIIRHAPYS 296
           PH A  T   + E +LD +RH+ Y+
Sbjct: 179 PHLASLTTKNVSEPELDKLRHSLYN 203


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -3

Query: 184 FMSRGYFSLQVLLSLFG--VWH 125
           ++ RGYFS++ LL L+   +W+
Sbjct: 148 YVDRGYFSIECLLYLWALKIWY 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,383
Number of Sequences: 5004
Number of extensions: 27147
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)