Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F10f
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1027 - 8132081-8132344,8133534-8134394                           26   7.1  
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    26   9.3  

>01_01_1027 - 8132081-8132344,8133534-8134394
          Length = 374

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 177 LMNRSSPLLLHDNARPHTARETVLTLQELQLDI 275
           L+  + PLLL  +ARP+ A     +L  L LD+
Sbjct: 135 LLQAAPPLLLRPDARPYRALWWAFSLPILALDV 167


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 129 QTPNKDSKTCNEK*PRLMNRSSPLLLHDNARPHTARETVLTLQELQLDIIRHAP 290
           QT NK       +  ++  RS+P++L D      A + +L L+   LD + H P
Sbjct: 305 QTKNKKGVPKLAETVQMDIRSTPMVLVDQDMFVLADDVILLLERAALDTLPHQP 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,236,448
Number of Sequences: 37544
Number of extensions: 169543
Number of successful extensions: 323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)