Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F10f
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 71 2e-13
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 64 3e-11
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 64 3e-11
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 64 3e-11
Z68880-2|CAA93097.2| 148|Caenorhabditis elegans Hypothetical pr... 27 2.8
U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical pr... 27 3.7
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 4.9
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 27 4.9
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 27 4.9
U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z68297-4|CAB54220.1| 356|Caenorhabditis elegans Hypothetical pr... 26 8.5
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 26 8.5
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 71.3 bits (167), Expect = 2e-13
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +3
Query: 189 SSPLLLHDNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDYHFFRDLE 341
S LLLHDNARPHTA +T LQ L ++++ H PYS DLAPTDYH FR L+
Sbjct: 207 SKLLLLHDNARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQ 257
Score = 32.3 bits (70), Expect = 0.098
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 16 KAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACL 123
K +L KK+++++WW GV+ L G I A L
Sbjct: 152 KGELHEKKVLLSIWWDSMGVIFRELLPDGATINADL 187
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +3
Query: 204 LHDNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDYHFFRDLEXF 347
LHDNARPH A++T LQ+L ++ H PYS DLAPTDYH F L +
Sbjct: 240 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDY 287
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 13 PKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRIAK 153
PK L KKI++ VWW G +H+ L + + ITA R+A+
Sbjct: 182 PKPDLHPKKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAE 228
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +3
Query: 204 LHDNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDYHFFRDLEXF 347
LHDNARPH A++T LQ+L ++ H PYS DLAPTDYH F L +
Sbjct: 215 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDY 262
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 13 PKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRIAK 153
PK L KKI++ VWW G +H+ L + + ITA R+A+
Sbjct: 157 PKPDLHPKKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAE 203
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +3
Query: 204 LHDNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDYHFFRDLEXF 347
LHDNARPH A++T LQ+L ++ H PYS DLAPTDYH F L +
Sbjct: 240 LHDNARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDY 287
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 13 PKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRIAK 153
PK L KKI++ VWW G +H+ L + + ITA R+A+
Sbjct: 182 PKPDLHPKKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAE 228
>Z68880-2|CAA93097.2| 148|Caenorhabditis elegans Hypothetical
protein T14G10.3 protein.
Length = 148
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 160 MKNSPDS*IDLRHYCSMITRDLIQ 231
+KN P+ I++RHYC+ D+ Q
Sbjct: 89 VKNVPEPYIEIRHYCNSEKGDIFQ 112
>U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical
protein T22F7.4 protein.
Length = 286
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 210 DNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDYHFFRDL 338
+NA P+ ++ + L ++ + PYS AP++Y F D+
Sbjct: 10 NNACPYGLKQVLQELARRGWMVLLYPPYSQGTAPSEYWSFSDV 52
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 RNNGMSTCQTPNKDSKTCNEK*PRLMNRSSPLLLHDNARP-HTARE 239
RNN CQ P S C E PR P + ++ +P HT+RE
Sbjct: 156 RNNNCFNCQQPGHRSSDCPE--PR--KEREPRVCYNCQQPGHTSRE 197
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 RNNGMSTCQTPNKDSKTCNEK*PRLMNRSSPLLLHDNARP-HTARE 239
RNN CQ P S C E PR P + ++ +P HT+RE
Sbjct: 156 RNNNCFNCQQPGHRSSDCPE--PR--KEREPRVCYNCQQPGHTSRE 197
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 RNNGMSTCQTPNKDSKTCNEK*PRLMNRSSPLLLHDNARP-HTARE 239
RNN CQ P S C E PR P + ++ +P HT+RE
Sbjct: 156 RNNNCFNCQQPGHRSSDCPE--PR--KEREPRVCYNCQQPGHTSRE 197
>U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical
protein H03E18.2 protein.
Length = 204
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 199 NGEDRFMSRGYFSLQVLLSLFGVWHVDMPLF 107
+GE + G+ S Q+L+SLF + H+ PLF
Sbjct: 157 DGEKKLRIAGFLSSQLLVSLFCL-HLSGPLF 186
>Z68297-4|CAB54220.1| 356|Caenorhabditis elegans Hypothetical
protein F11A10.6 protein.
Length = 356
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 45 YYLFIGKLCFRTLLR 1
++ IGK+CFRTL R
Sbjct: 243 FFTLIGKVCFRTLAR 257
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 143 LVWSLARRHAVIPWPDRR 90
LV+ +RR ++PWP RR
Sbjct: 101 LVFDGSRRDEILPWPQRR 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,119,410
Number of Sequences: 27780
Number of extensions: 154754
Number of successful extensions: 364
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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