Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F10f
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    68   4e-14
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          46   2e-07
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          34   4e-04
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.78 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   0.78 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 67.7 bits (158), Expect = 4e-14
 Identities = 33/67 (49%), Positives = 40/67 (59%)
 Frame = +3

Query: 141 KDSKTCNEK*PRLMNRSSPLLLHDNARPHTARETVLTLQELQLDIIRHAPYSLDLAPTDY 320
           K +    EK P L NR   +  HDNARPHT+  T   L EL  D++ H PYS DLAP+DY
Sbjct: 222 KLNNAVEEKRPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDY 281

Query: 321 HFFRDLE 341
             FR L+
Sbjct: 282 FLFRSLQ 288



 Score = 35.1 bits (77), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +1

Query: 4   QQCPKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRIAKLAMKNSPD 177
           Q   KA +  KK++++VWW   G++++  L   + I + +  +  T++     +  P+
Sbjct: 176 QTTSKAGIHRKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPE 233


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 45.6 bits (103), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 28/50 (56%)
 Frame = +3

Query: 141 KDSKTCNEK*PRLMNRSSPLLLHDNARPHTARETVLTLQELQLDIIRHAP 290
           K +    EK P L NR S +  HDNARPHT+  T   L EL  D++ H P
Sbjct: 100 KLNNAVEEKRPELTNRKSVVFHHDNARPHTSLVTRQKLLELGWDVLPHPP 149



 Score = 35.5 bits (78), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +1

Query: 4   QQCPKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRIAKLAMKNSPD 177
           Q   KA +  KK++++VWW   G++++  L   + I + +  +  T++     +  P+
Sbjct: 54  QTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLNNAVEEKRPE 111


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 34.3 bits (75), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 141 KDSKTCNEK*PRLMNRSSPLLLHDNARPHTARETVLTLQELQLDIIRHA 287
           K +    EK   L NR   +  HD+ARPHT   T   L EL  D++ H+
Sbjct: 101 KLNNAIEEKRFELTNRKGVVFHHDDARPHTYLVTRQKLLELGWDVLPHS 149



 Score = 32.7 bits (71), Expect = 0.001
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   QQCPKAKLTNKKIIVTVWWSQHGVMHYNFLRSGQGITACLRAKLQTRI 147
           Q   KA +  KK+++ VWW   G++++  L   + I + +  +  T++
Sbjct: 55  QTTSKAGIHRKKVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLTKL 102


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 196 GEDRFMSRGYFSLQVLLSLFGVWHVDMPLFL 104
           G D F +RG  S   L+  +G+W   +PLFL
Sbjct: 203 GTDYF-NRGLLSASYLVC-YGIWVYFVPLFL 231


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 196 GEDRFMSRGYFSLQVLLSLFGVWHVDMPLFL 104
           G D F +RG  S   L+  +G+W   +PLFL
Sbjct: 79  GTDYF-NRGLLSASYLVC-YGIWVYFVPLFL 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 262 SSCRVKTVSRAV*GLALSWSNNGEDRFMSRGYFSLQVLLSLFGVWHVDM 116
           + C V  V+  +       S NG+ R  +   F+L V   + GV  +DM
Sbjct: 109 ADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDM 157


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 176 SGLFFIASFAILVWS 132
           SGLF + SF ILV S
Sbjct: 63  SGLFSVFSFLILVSS 77


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -2

Query: 188  SIHESGLFFIASFAILVWSLARRHAVIP 105
            S+H +G ++    + L + +  RH + P
Sbjct: 1061 SVHRAGSYYGVPHSTLEYKVKERHLMRP 1088


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,551
Number of Sequences: 438
Number of extensions: 1831
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)