Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 29 0.32
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 0.97
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 3.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 3.9
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 5.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 5.2
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 25 5.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.2
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 5.2
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 25 6.8
>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.32
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 341 SQRQAITELAPTQPA-VDEEEETPEIDIMINNVVCSFSXKCHLNLRQIALNGVNVEF 508
+ +A E A + A V + E I + N+V + + C L+L+ IAL+ N E+
Sbjct: 29 ANNEATNETADSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEY 85
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 0.97
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 233 SKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETP 409
SK T ++ +H + T + ++ TP QR+A T P A ++ E P
Sbjct: 292 SKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 242 THGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDI 421
T + AN ++ HS P + E +TT+ + +T L+P +P+ EE I
Sbjct: 395 TRPINANPHLTNHS-PNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSMEE----QI 449
Query: 422 M-INNVVCSFSXKCHLN 469
M + + S + HLN
Sbjct: 450 MDLTQPISSTNAPTHLN 466
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +2
Query: 227 ELSKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEET 406
E++KG G+ + S TH P+ T TP + I AP++PA +
Sbjct: 340 EINKG-EGITSGLRKVDKSEMTHKNPN---LRKTGPTPGPKPKIKSSAPSKPAETAPVKP 395
Query: 407 PEIDI 421
P I++
Sbjct: 396 PRIEL 400
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 272 STHSVPTHMVPDHEYCETTAQTPSQRQ--AI-TELAPTQPAVDEEEETPEIDIMIN 430
ST T P E ET + P + A+ TE + T+P+ EE TP + N
Sbjct: 422 STPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPN 477
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 173 YQHSVVVMATLIQENGIKELSKGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQ 352
Y+ S ++I ++ EL T +A+H + S + DHE + S +
Sbjct: 9 YRRSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVESDHE-------SKSSSK 61
Query: 353 AITELAPTQPAVDEEEE 403
+ E A + +EEEE
Sbjct: 62 KLKENAKEEEGGEEEEE 78
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 323 SRNIHGLAPYVLGHCVWI 270
SR+IH +P+ LG +W+
Sbjct: 360 SRDIHNSSPFKLGDSIWL 377
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 266 GISTHSVPTHMVP--DHEYCE-TTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNV 436
GI+TH VP HM P + E T+ I E A + TP++ +IN
Sbjct: 231 GIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASS-SPPTFTPDVMDVINKC 289
Query: 437 VC 442
C
Sbjct: 290 FC 291
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 168 VYISTPWWSW 197
V+I PWWSW
Sbjct: 1055 VFIMDPWWSW 1064
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 371 PTQPAVDEEEETPEIDIM 424
P QP DEEEE E D M
Sbjct: 169 PVQPDADEEEEEEEADEM 186
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 179 HSVVVMATLIQENGIKELSKGTHGVVANHGIS 274
H++ V+A + NG++++ GT+G ++ S
Sbjct: 65 HAIQVIAAIAAGNGVEKIIVGTNGYLSTPAAS 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,732
Number of Sequences: 5004
Number of extensions: 38533
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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