Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F05f
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    26   3.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   4.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   5.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.6  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   7.4  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   7.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   9.8  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 323 LAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXSVPLAVDSEHDQ 463
           L  EE + ++  H+     +  + T +S+T+P     P+AV+S +D+
Sbjct: 292 LDEEEKLSRELDHK----TKDASSTNDSQTTPLPPPPPVAVNSTNDE 334


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 270  HLHFEIRSTPFNYTTGRLSPEKSQWISNDNTEGSARPRVK 389
            H +F I+S+P   T G+  P+K       N   S +P VK
Sbjct: 1202 HQNFGIKSSPAISTNGKTQPKK----QTANRRQSGKPNVK 1237


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 318  RLSPEKSQWISNDNTEGSARPRVKLELKNP 407
            +LS ++ +W+S ++  G+ RP    +L+ P
Sbjct: 1278 KLSKKQPEWVSFNSFSGTVRPSNSEKLQRP 1307


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 406 GFFSSSFTLGLAEPSVLSLLIH 341
           GF++++FT G    SV S+ +H
Sbjct: 172 GFYNTTFTTGYFNTSVTSVAVH 193


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 138 LDPQFKDGVDYHTLTYENRAIDLDDLDSPSGHVLTGVRFRMLGAHLHFEIRSTPFNYTTG 317
           L P   + VDY+  T     I+  ++      VL  +   +L  + +F   S+P + +TG
Sbjct: 467 LPPNVAEKVDYYVETI----IETPEIGIAIVAVLGSLTAVILTCYFYFFASSSPASLSTG 522

Query: 318 RLSPEKSQ 341
               EK Q
Sbjct: 523 TTEAEKEQ 530


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 255 GT*HRSGRVRRASLDRPNRWPGFRKLACG 169
           G  H +  VR    +R  RW G  K  CG
Sbjct: 214 GDWHSTQPVREGEDERAGRWRGREKTECG 242


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 66  YESTLKERGLIEGGDWVPVQKFDPLDPQFKDGVDYHTLTYENRAIDLDDL 215
           Y S ++ RG I    W   Q+F  + P+   G+D+H   Y + A+  D L
Sbjct: 282 YTSYVQHRGSIPLR-WS--QEFSNITPKPPIGIDFHDPFYASTALHFDRL 328


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 120 VQKFDPLDPQFKDGVDYHTLTYENR 194
           V+  D L+  F+D +   TLT +N+
Sbjct: 370 VKGMDTLEDSFRDAIQVETLTGDNK 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,130
Number of Sequences: 5004
Number of extensions: 40449
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)