Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F05f
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 29 2.4
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 29 2.4
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 27 5.6
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 27 5.6
10_06_0126 - 11024495-11024905 27 7.3
07_03_1697 - 28795521-28797328,28797430-28797550 27 7.3
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 27 7.3
04_01_0363 + 4754650-4755912 27 9.7
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 27 9.7
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 185 RKPGHRFGRSRLALRTRPDRCQVPNAG 265
+ P +RFGRS +LR D +V NAG
Sbjct: 491 KHPWNRFGRSEASLRVAYDYTKVENAG 517
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 33 IKHGRVFHLQVYESTLKERGLIEGGDWVPVQKFDPLDPQFKDGVDY 170
I H +++ L ER L++ G P +K+ PL P+F + Y
Sbjct: 346 ISHREFYNVWQRFGVLPERYLLDFGMLHPTEKYYPLRPEFAESTFY 391
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 265 AHIYTSRSDRRHSTILRDDSRQRRVSGSATTTPRAPR 375
+H YT S RR+S+ + S + S T P PR
Sbjct: 268 SHYYTDESGRRNSSAVNMKSLEHSPSMGCKTPPAVPR 304
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 166 STPSL-N*GSKGSNFCTGTQSPPSMSPLSFSVLSYTCRWN 50
S PSL S GS+ + + + SPL+ + SY C WN
Sbjct: 750 SFPSLIGDASSGSSMNSSESAFNTASPLALASYSYACPWN 789
>10_06_0126 - 11024495-11024905
Length = 136
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 286 SDRRHSTILRDDSRQRRVSGSATT 357
S HST + DDSR+R S++T
Sbjct: 34 SSNTHSTAVEDDSRKRATKSSSST 57
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 335 ESVDQQRQHRGLREAQGKTGTEESRTSPRAXSVPLAVDS 451
E D QR + +A+GK +EE+ SPR V L S
Sbjct: 175 ELQDVQRSDQTESDAEGKKSSEETSQSPRRDVVELPPSS 213
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 222 PSGHVLTGVRFRMLGAHLHFEIRSTPFNYTTGRLSPEKSQWISNDNTEGSARPRVK 389
P G + V + G HL F +R + T+G+L WI+ D G ARP K
Sbjct: 168 PEGARINFVTWSQDGRHLSFSVRVDEEDNTSGKL----RLWIA-DVESGEARPLFK 218
>04_01_0363 + 4754650-4755912
Length = 420
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 11 EGDRAAID*TRKSIPSTSVREYTEGEGTHRRR*LGPSA 124
EG R A D R + + + TEGE HRRR P+A
Sbjct: 146 EGGRQAADGDRDDLKNEK-EKITEGERGHRRRERRPNA 182
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -3
Query: 461 GRAQSPPRAARXLRVGMSGILQFQFYPGPRGALGVVVADPLTLLWRESSRSIVEWRRSDL 282
GRA + A R + + +Q P P L V P LWRES E+ SDL
Sbjct: 3 GRASAAAAVAAFGRRA-ARLRSWQIRPVPAWILRAVRFPPRFFLWRESDVGFKEFLASDL 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,482
Number of Sequences: 37544
Number of extensions: 305788
Number of successful extensions: 840
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -