Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F05f
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 34 0.27
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 34 0.27
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 34 0.27
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 34 0.27
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 34 0.27
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 34 0.27
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 34 0.27
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 34 0.27
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 34 0.27
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 31 1.5
AY092033-1|AAM14669.1| 922|Homo sapiens NALP3 intermediate isof... 31 2.5
AF468522-1|AAL78632.1| 1036|Homo sapiens NALP3 long isoform prot... 31 2.5
AF418985-1|AAL14640.2| 719|Homo sapiens NALP3 short isoform pro... 31 2.5
BC131559-1|AAI31560.1| 507|Homo sapiens QRICH2 protein protein. 29 5.9
AY130006-1|AAN05090.1| 90|Homo sapiens MU-MB-2.76 protein. 29 5.9
AB051466-1|BAB21770.1| 1536|Homo sapiens KIAA1679 protein protein. 29 5.9
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLELK 401
KS +S TE KL LK
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLALK 1042
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 31.5 bits (68), Expect = 1.5
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +3
Query: 165 DYHTLTYENRAIDLDDLDSPSGHVLT--GVRFRMLGAHLHFEIRSTPFNYTTGRL--SPE 332
D TL Y ++ DL S +VL V F L HLH E NY L S E
Sbjct: 960 DLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEE 1019
Query: 333 KSQWISNDNTEGSARPRVKLEL 398
KS +S TE KL L
Sbjct: 1020 KSAPVSTTETEDKGDVIKKLGL 1041
>AY092033-1|AAM14669.1| 922|Homo sapiens NALP3 intermediate isoform
protein.
Length = 922
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 266 RTSTLRDQIDAIQLYYGTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXSVPLAV 445
R + L + + +LY L +E Q+R+ L A GKT T ES SP +
Sbjct: 154 RNARLGESVSLNKLYTRLRLIKEHRSQQEREQELL--AIGKTKTCESPVSPIKMELLFDP 211
Query: 446 DSEHDQ 463
D EH +
Sbjct: 212 DDEHSE 217
>AF468522-1|AAL78632.1| 1036|Homo sapiens NALP3 long isoform
protein.
Length = 1036
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 266 RTSTLRDQIDAIQLYYGTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXSVPLAV 445
R + L + + +LY L +E Q+R+ L A GKT T ES SP +
Sbjct: 154 RNARLGESVSLNKLYTRLRLIKEHRSQQEREQELL--AIGKTKTCESPVSPIKMELLFDP 211
Query: 446 DSEHDQ 463
D EH +
Sbjct: 212 DDEHSE 217
>AF418985-1|AAL14640.2| 719|Homo sapiens NALP3 short isoform
protein.
Length = 719
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 266 RTSTLRDQIDAIQLYYGTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXSVPLAV 445
R + L + + +LY L +E Q+R+ L A GKT T ES SP +
Sbjct: 154 RNARLGESVSLNKLYTRLRLIKEHRSQQEREQELL--AIGKTKTCESPVSPIKMELLFDP 211
Query: 446 DSEHDQ 463
D EH +
Sbjct: 212 DDEHSE 217
>BC131559-1|AAI31560.1| 507|Homo sapiens QRICH2 protein protein.
Length = 507
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +1
Query: 268 HIYTSRSDRRHSTILRDDSRQRRVSGSATTTPRAPRGPG*NWN*RIPDIP 417
HIY R D R ILR DS S P R P + N ++P P
Sbjct: 445 HIYKGRMDTRLPGILRKDSSGTSKRKSQQPRPHVHRPPSLSSNGQLPSRP 494
>AY130006-1|AAN05090.1| 90|Homo sapiens MU-MB-2.76 protein.
Length = 90
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 226 PDTS*PVSGSECWAHIYTSRSDRRHSTILRDDSRQRRVSGSATTTPRAPRGP 381
P +S +S + W +SRS R + R SR RR S + T++ + R P
Sbjct: 3 PSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSP 54
>AB051466-1|BAB21770.1| 1536|Homo sapiens KIAA1679 protein protein.
Length = 1536
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 333 KSQWISNDNTEGSARPRVKLELKNPGHPHAQXPCRS 440
+S+W+ G RP KL+LKN H PC S
Sbjct: 951 RSKWLKEKPYNGG-RPCPKLDLKNQAQVHEAVPCYS 985
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,324,337
Number of Sequences: 237096
Number of extensions: 1670743
Number of successful extensions: 4633
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4632
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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