Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F05f
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 29 2.1
DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 prote... 29 2.1
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 29 2.1
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 2.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 2.1
Z92806-4|CAB07259.1| 727|Caenorhabditis elegans Hypothetical pr... 28 3.7
U21321-10|AAG00048.2| 325|Caenorhabditis elegans T box family p... 28 3.7
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 23 4.7
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 23 4.7
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 23 4.8
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 23 4.8
Z75713-3|CAB54301.1| 419|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z75713-2|CAB00051.2| 422|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 27 4.9
X51321-1|CAA35704.1| 422|Caenorhabditis elegans hypothetical pr... 27 4.9
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 6.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 6.5
AL117205-6|CAB55166.2| 167|Caenorhabditis elegans Hypothetical ... 27 8.6
AL117205-2|CAB55164.1| 169|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 27 8.6
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 351 NDNTEGSARPRVKLELKNPGHPHAQXPCRS 440
ND T G RP VK+ K P+A P +S
Sbjct: 405 NDKTSGRRRPSVKISKKKTPAPNANLPLKS 434
>Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical
protein F46F6.4b protein.
Length = 158
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 314 GTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXS 430
G ++ E S D+Q Q R L E QG EE SP+ S
Sbjct: 27 GNPISDESSEDEQSQIRALEEDQGIYYNEEVVASPKNES 65
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 314 GTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXS 430
G ++ E S D+Q Q R L E QG EE SP+ S
Sbjct: 27 GNPISDESSEDEQSQIRALEEDQGIYYNEEVVASPKNES 65
>DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 protein
protein.
Length = 161
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 314 GTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXS 430
G ++ E S D+Q Q R L E QG EE SP+ S
Sbjct: 30 GNPISDESSEDEQSQIRALEEDQGIYYNEEVVASPKNES 68
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 314 GTTLAREESVDQQRQHRGLREAQGKTGTEESRTSPRAXS 430
G ++ E S D+Q Q R L E QG EE SP+ S
Sbjct: 30 GNPISDESSEDEQSQIRALEEDQGIYYNEEVVASPKNES 68
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 289 LISKCRCAPSIRNLTPVRTCPEG 221
L +CRC P +T + CPEG
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEG 1419
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 289 LISKCRCAPSIRNLTPVRTCPEG 221
L +CRC P +T + CPEG
Sbjct: 1397 LTGQCRCLPGFTGMTCNQVCPEG 1419
>Z92806-4|CAB07259.1| 727|Caenorhabditis elegans Hypothetical
protein K10G4.4 protein.
Length = 727
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 413 MSGILQFQFYPGPRGALGVVVADPLTLLWRESSRSIVEWRRSDL 282
M+ +L F F PGP A+ + + T L ES S+ +W+++D+
Sbjct: 414 MTSVLSF-FEPGPLQAIMLDMDKRTTALNLESIVSLEQWKQADM 456
>U21321-10|AAG00048.2| 325|Caenorhabditis elegans T box family
protein 35 protein.
Length = 325
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 133 SNFCTGTQSPPSMSPLSFSVLSYTCRWNTLPCLINRS 23
S FC + PS SP S S+ +T WNT P N +
Sbjct: 280 SIFCQQSFPTPSSSPYSDSLPHFTNEWNT-PTFYNEN 315
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 276 HFEIRSTPFNYTTGRLSPEKS 338
H + PF+ TTG+ P K+
Sbjct: 3495 HHRVTIAPFDPTTGKTGPSKN 3515
Score = 22.2 bits (45), Expect(2) = 4.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 108 DWVPVQKFDPLDPQFKDGVDYHTLT 182
DWVP + F DP+ ++ + +H +T
Sbjct: 3478 DWVPPEIF---DPEQRELITHHRVT 3499
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 276 HFEIRSTPFNYTTGRLSPEKS 338
H + PF+ TTG+ P K+
Sbjct: 3495 HHRVTIAPFDPTTGKTGPSKN 3515
Score = 22.2 bits (45), Expect(2) = 4.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 108 DWVPVQKFDPLDPQFKDGVDYHTLT 182
DWVP + F DP+ ++ + +H +T
Sbjct: 3478 DWVPPEIF---DPEQRELITHHRVT 3499
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 23.4 bits (48), Expect(2) = 4.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 276 HFEIRSTPFNYTTGRLSPEKS 338
H + PF+ TTG+ P K+
Sbjct: 3495 HHRVTIAPFDPTTGKTGPSKN 3515
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 108 DWVPVQKFDPLDPQFKDGVDYHTLT 182
DWVP + F DP+ ++ + +H +T
Sbjct: 3478 DWVPPEIF---DPEQRELITHHRVT 3499
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 23.4 bits (48), Expect(2) = 4.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 276 HFEIRSTPFNYTTGRLSPEKS 338
H + PF+ TTG+ P K+
Sbjct: 3495 HHRVTIAPFDPTTGKTGPSKN 3515
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 108 DWVPVQKFDPLDPQFKDGVDYHTLT 182
DWVP + F DP+ ++ + +H +T
Sbjct: 3478 DWVPPEIF---DPEQRELITHHRVT 3499
>Z75713-3|CAB54301.1| 419|Caenorhabditis elegans Hypothetical
protein T01G9.2b protein.
Length = 419
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 454 LRVHRERHGXCAWGCPGFFSSSFTLGL 374
+++HR H +G P FF + F +GL
Sbjct: 282 MKIHRGLHKETLYGPPNFFFNYFVMGL 308
>Z75713-2|CAB00051.2| 422|Caenorhabditis elegans Hypothetical
protein T01G9.2a protein.
Length = 422
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 454 LRVHRERHGXCAWGCPGFFSSSFTLGL 374
+++HR H +G P FF + F +GL
Sbjct: 285 MKIHRGLHKETLYGPPNFFFNYFVMGL 311
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 459 SCSESTAS--GTEXARGDVRDSSVPVLP 382
S SE+ AS GTE R +RDS+V VLP
Sbjct: 68 SVSENLASLNGTELGRLTIRDSTVNVLP 95
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 459 SCSESTAS--GTEXARGDVRDSSVPVLP 382
S SE+ AS GTE R +RDS+V VLP
Sbjct: 68 SVSENLASLNGTELGRLTIRDSTVNVLP 95
>X51321-1|CAA35704.1| 422|Caenorhabditis elegans hypothetical
protein protein.
Length = 422
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 454 LRVHRERHGXCAWGCPGFFSSSFTLGL 374
+++HR H +G P FF + F +GL
Sbjct: 285 MKIHRGLHKETLYGPPNFFFNYFVMGL 311
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 303 NYTTGRL--SPEKSQWISNDNTEGSARPRVKLELKNPGHPHA 422
+YTT R+ + K +I N +GS R +V K HPHA
Sbjct: 1651 DYTTDRVYFADSKLDFIDFVNYDGSGRTQVLASSKFVQHPHA 1692
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 303 NYTTGRL--SPEKSQWISNDNTEGSARPRVKLELKNPGHPHA 422
+YTT R+ + K +I N +GS R +V K HPHA
Sbjct: 1651 DYTTDRVYFADSKLDFIDFVNYDGSGRTQVLASSKFVQHPHA 1692
>AL117205-6|CAB55166.2| 167|Caenorhabditis elegans Hypothetical
protein Y116A8A.7 protein.
Length = 167
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 270 HLHFEIRSTPFNYTTGRLSPEK--SQWISNDNTE 365
++ F I PFNYTT ++ +WI+ N E
Sbjct: 108 NMFFNITFAPFNYTTENTKNDRITVKWINTPNNE 141
>AL117205-2|CAB55164.1| 169|Caenorhabditis elegans Hypothetical
protein Y116A8A.2 protein.
Length = 169
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 270 HLHFEIRSTPFNYTTGRLSPEK--SQWISNDNTE 365
++ F I PFNYTT ++ +WI+ N E
Sbjct: 110 NMFFNITFAPFNYTTENTKNDRITVKWINTPNNE 143
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 156 DGVDYHTLTYENRAIDLDDLDS 221
D VDYH +TY N+ L ++DS
Sbjct: 162 DHVDYHFITYVNKNGQLYEIDS 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,216,863
Number of Sequences: 27780
Number of extensions: 235046
Number of successful extensions: 733
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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