Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F05f
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   4.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -1

Query: 142 SKGSNFCTGTQSPPSMSPLSFSVLSYTCR 56
           +K   FC     P   S   FS   Y CR
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -1

Query: 142 SKGSNFCTGTQSPPSMSPLSFSVLSYTCR 56
           +K   FC     P   S   FS   Y CR
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECYCCR 95


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 456 CSESTASGTEXARGDVRDSSV 394
           CS S  S T      VRDSS+
Sbjct: 333 CSPSNPSITRTGLSSVRDSSI 353


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 138 RDRTSALGPSHLLR*VPSPSVY 73
           R R   + PSH +  +P+P  Y
Sbjct: 323 RSREHRIIPSHYIEQIPAPVYY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,693
Number of Sequences: 438
Number of extensions: 2960
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)