Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   0.73 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    27   1.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    27   1.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   3.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 276 FSRMSSISVLFGAGSAALGSCRASKLRRS--FPPL*NDG 166
           F+      V FG+G+  +GS R +K ++S   PP  NDG
Sbjct: 511 FAEAVKKEVTFGSGNTNIGSLRQTKFKQSNYTPPELNDG 549


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 294 VPLSRMFSRMSSISVLFGAGSAALGSCRASKLRRSFPPL*NDGVVAENDP 145
           VP + +F+R S I   +  G +A+ +CR++   RS  P  ND + +   P
Sbjct: 65  VPCTYLFARTSLILGRYKQGISAVEACRSN--WRSIQPNINDSISSRGHP 112


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 395 VSGARNG-EMMDTFDFLIKSLSSANNYVSMLTRXQLSVL 508
           V  AR G +++D  DF + S SSA  +  +LT  Q +++
Sbjct: 210 VESARAGLDLLDQSDFSLTSPSSAKEFKQLLTLKQSTII 248


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 200 NLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPES 358
           N+L   E R + P   +  ++D  +N R N   P+F  +DP H +  G   +S
Sbjct: 745 NILYFAENRNS-PVLGTIHLKDAQVN-RYNANLPIFSIIDPPHEFLTGENYQS 795


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 404 ARNGEMMDTFDFLIKSLSSANNYVSMLTRXQLSVLRS 514
           +RN +++  F  ++   S  N YVSM    Q   +RS
Sbjct: 255 SRNLDLLRKFSHVLHDFSGPNAYVSMYLAKQTDFVRS 291


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 308 DDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSANN 469
           +D  P+ N+  G    S A+S+  ND SS      G  ++ F  L  + +S+NN
Sbjct: 331 NDSIPSQNFKSGKTFVSNANSSNSNDGSSSKSLDVGSFVNAFKQLNVNDNSSNN 384


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 258 WKTFY*TCDSMAL-TRYSMIWIQIITTFW 341
           +KTFY +     L T ++ IW+   TT+W
Sbjct: 470 YKTFYESRSWFHLVTNFNRIWVIHFTTYW 498


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 249 APKWKTFY*TCDSMALTRYSMIWIQIITTFWG--GVQSPW 362
           A  WK +  T D + +  + M+ + I T F+G  G Q  W
Sbjct: 394 AASWKYYKYTIDGIYIIYFDMLALIIPTIFFGFFGSQGHW 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,072
Number of Sequences: 5004
Number of extensions: 42176
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)