Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F03f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    23   1.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.8  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   3.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.6  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +3

Query: 159 EALEPENLVKAPHSFVIHRGQCSKDLVDLTRDFRKIMEPFTASQLKERKKN 311
           + L+ + L+K   + ++ RG+CS D  +L  +    ++  + S+  +R+K+
Sbjct: 33  QILKSDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQT-SCSKCSQRQKD 82


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 288 QLKERKKNTIKDFVSISGYLHVSHMVLFTETELG 389
           Q+K+R++ T KD     G+L    ++  T+T++G
Sbjct: 214 QVKKREEVTQKDSPMNMGHLTQQQIIHNTQTQMG 247


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 278 HCFTIKRTQEKYNQRFCVHIWLSSCITHGPFYGN*TWFLHET 403
           H FTI  +  KY  RF  H+  ++ I   P+    T+   ET
Sbjct: 87  HGFTILNSMHKYQPRF--HLVRANDILKLPYSTFRTYVFKET 126


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +3

Query: 159 EALEPENLVKAPHSFVIHRGQCSKDLVDLTRDFRKIMEPFTASQLKERKKN 311
           + L+ + L+K   + ++ RG+CS D  +L  +    ++  + S+  +R+++
Sbjct: 33  QILKSDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQT-SCSKCSQRQQD 82


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 FSGSKASLLAEFFFTHFPLRFP 113
           FS   + +L E+F++H    +P
Sbjct: 237 FSKQASEILNEYFYSHLSNPYP 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,445
Number of Sequences: 336
Number of extensions: 2418
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)