Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 91 7e-20
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 31 0.10
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 31 0.14
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 27 1.3
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 1.7
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 26 3.0
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 5.2
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 6.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.0
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 91.5 bits (217), Expect = 7e-20
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Frame = +3
Query: 168 EPENLVKAPHSFVIHRG--QCSKDLVDLTRDFRKIMEPFTASQLKERKKNTIKDFVSISG 341
+P P S VI G + + L LTRD R +MEP TA +LKERK N IKD+++++G
Sbjct: 18 DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAG 77
Query: 342 YLHVSHMVLFTETELGSYMRLARLPRGPTLTFKIHNYSLARDV 470
L V+H+++ + T+ + +R+ R PRGP+L F+IH Y L +DV
Sbjct: 78 PLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDV 120
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 31.1 bits (67), Expect = 0.10
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +3
Query: 147 SASKEALEPENLVKAPHSFVIH-RGQCSKDLVDLTRDFRKIMEPFTASQLKERKKNTIKD 323
S + +A E E+ +APHSFV H SKD LT +F +++ + +D
Sbjct: 153 SDASQANERES--QAPHSFVTHDLISSSKDGNSLTHEF---ANDSVTEMVQDYTPSCSRD 207
Query: 324 FVSISGYLHVS--HMVLFTETELGSYMRLARLPRGPTLTFKIHNYSLARDVISSLKK 488
S+ +L+ S + +L T+T + Y++ + + L ++HN+ + ++ L K
Sbjct: 208 VKSLLDHLYNSYFYQLLMTKTPVVFYVK-QMVGKTRQLAVEVHNHVEEKALVDELLK 263
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 402 LARLPRGPTLTFKIHNYSLARDV 470
++ LP GPTL+F +HN L D+
Sbjct: 152 ISHLPYGPTLSFSLHNVVLRHDI 174
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 393 YMRLARLPRGPTLTFKIHN 449
Y+ +AR P GPT+ F + N
Sbjct: 110 YLHIARAPNGPTVKFHVEN 128
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 249 RDFRKIMEPFTASQLKERKKNTIKDFVSISGYLHVSHMVLFTETE-LGSYMRL 404
+ + K PF + K +KK + F SG LH+ H+ ++T ++ L Y R+
Sbjct: 42 KSYWKSHYPFVKND-KGKKKYILSMFPYPSGLLHIGHVRVYTISDILSRYYRM 93
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 287 TIKRTQEKYNQRF---CVHIWLSSCITHGPFYGN*TWFLHETCQTTSR 421
TI + + NQ CV I+LS CIT FY T +ETC +R
Sbjct: 436 TIPKNVDFENQHIFTACVEIYLSYCITQLYFYDPLT--NYETCLEIAR 481
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 416 SRAYTNF*DTQLQLSS*CNIFTEKTICDDACLPKC 520
+R + N + L+ S NIF EK I + CL +C
Sbjct: 234 ARDFPNEIRSYLEASKNFNIFKEKEILRNICLDEC 268
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 393 YMRLARLPRGPTLTFKIHNYSLARDVISSLKKQYVMM 503
Y RLP+ FKIH SL + ++ S VM+
Sbjct: 151 YQYKKRLPKDENQDFKIHYLSLLKSLLVSYAGIVVML 187
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 237 VDLTRDF---RKIMEPFTASQLKERKKNTIKDFVSISGYL 347
VDLT+ KI E + SQL E++K + + +SGYL
Sbjct: 69 VDLTQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYL 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,980
Number of Sequences: 5004
Number of extensions: 40669
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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