Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F02f
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.4
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 3.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 3.3
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.3
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.7
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 5.7
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 5.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 7.6
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 24 7.6
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 10.0
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 10.0
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 10.0
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 24 10.0
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 1.4
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 263 SVCKKEKKYIDGELVVSRGCTWKRQDDFQSRLPYFQKR 376
+V + Y++ E+V + W+R DF+S + +++
Sbjct: 32 TVTSSDGSYVEYEIVHQKRSVWRRYSDFESLVKLMRRQ 69
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3
Query: 386 FVCFVSGSRATGFGSHPGVSRCN 318
F+ FVS + +TGFGS GVS CN
Sbjct: 70 FIVFVSKADSTGFGS-KGVS-CN 90
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 171 ILKGSLHSGFTLDEHAQQFTGSLSFT 94
++ SLH+ F + HA TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 117 FTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLS 16
F GSL FT+ R+KT F+++ +KL + +
Sbjct: 730 FKGSLLFTDDKRNKTEDSTVFFSMICSSKLDQFA 763
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 193 LFVPPRKLRQECWSYLSLF 249
+FVPP++ C +Y+ LF
Sbjct: 173 IFVPPKRSSSSCVTYVCLF 191
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 357 NRLWKSSWRFQVQPRLTTNSPSMYFFSFLH 268
+R +KS + + PRLTT+S + + L+
Sbjct: 429 DRYYKSLYESLLDPRLTTSSKQSLYLNLLY 458
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 33 YCAS*WQNYRFLCPFCFLRY 92
YC S RFL FCF+ Y
Sbjct: 8 YCPSSKVTARFLVKFCFIEY 27
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 263 SVCKKEKKYIDGELVVSRGCTWKRQDDFQSRLP 361
++ +KE +Y+ E SR + + + F SR P
Sbjct: 1351 AIARKENRYMSVEDATSRESSISKVESFLSRFP 1383
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 350 FGSHPGVSRCNHDSQLIHHQCISFLS 273
F HP + N ++H+ C+ FL+
Sbjct: 2 FARHPNLLWLNKQLSILHYLCLVFLA 27
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 162 GSLHS--GFTLDEHAQQFTGSLSFTNSARSK 76
GSL + GFTLDE FT S S + A SK
Sbjct: 462 GSLETTNGFTLDERNLAFTLSNSVGHMAPSK 492
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 301 ISCESWLHLETPG*LPKPVALLPETKQTKXISS 399
+SC + + T G P + PE+ TK I++
Sbjct: 42 VSCPKYTTIYTSGTSPDTKTIYPESTSTKSITT 74
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 134 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKN 226
+N+N N P IDTG ++ R KN
Sbjct: 429 NNINSEPNTPTKSNIDTGKAHSARAHKTRKN 459
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 301 ISCESWLHLETPG*LPKPVALLPETKQTKXISS 399
+SC + + T G P + PE+ TK I++
Sbjct: 42 VSCPKYTTIYTSGTSPDTKTIYPESTSTKSITT 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,788
Number of Sequences: 5004
Number of extensions: 32852
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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