Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F02f
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0214 + 13141213-13143741 29 1.4
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 29 1.4
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 3.1
10_01_0269 - 2865731-2865752,2866627-2868605 27 4.1
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 27 4.1
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 27 4.1
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 5.5
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 7.2
05_04_0266 - 19558769-19559275,19560852-19560933,19561354-195618... 27 7.2
03_02_0902 + 12278770-12281448 27 7.2
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 26 9.5
>06_02_0214 + 13141213-13143741
Length = 842
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 125 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 220
A S+ N L N + +D+G SYL R CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 367 EVGQPALEVILAFPGATT 314
+VG PAL+V LAFP ATT
Sbjct: 12 KVGLPALDVALAFPQATT 29
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 208 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 110
EA+++ G + I++IVAQ +R R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 180 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 85
++R L G L SG T+ EH++ GS S NSA
Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 174 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 73
RI + LH+ +T D AQ+F L + +S R KT
Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/90 (16%), Positives = 35/90 (38%)
Frame = +2
Query: 107 EPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAGATFPYLTASKSVCKKEKK 286
EP++ C+ + + F + +DT + + ++ C+ +
Sbjct: 52 EPMDDMVCTYHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLN 111
Query: 287 YIDGELVVSRGCTWKRQDDFQSRLPYFQKR 376
Y++ EL ++G Q+ + FQ+R
Sbjct: 112 YVEQELAATKGRESAMQERLLKEVGDFQER 141
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 156 LHSGFTLDEHAQQFTGSLSFTNSARSKT 73
LH+ +T D AQ+F L + +S R KT
Sbjct: 556 LHNKYTEDRFAQEFGIKLKYHDSGREKT 583
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 314 RGCTWKRQDDFQSRLPYFQK 373
+G WKR DDF PY +K
Sbjct: 702 KGGDWKRNDDFSQDKPYRKK 721
>05_04_0266 -
19558769-19559275,19560852-19560933,19561354-19561865,
19563113-19563124
Length = 370
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 122 WACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAGATFPYLTASKSVCKKEKKYI 292
W CS + C DP +I D+ ++ N K T + + K + Y+
Sbjct: 246 WHCSRRPDCSCEDPADIEYDSSRIWVLDKPNIPKPPAGTERLVIMRGDLSKMDTYYV 302
>03_02_0902 + 12278770-12281448
Length = 892
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 134 SNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAG 232
+NVN N + +++D G YL RL C+ +G
Sbjct: 307 NNVNLQYNLTWAMQVDAGYQYLVRLHFCEIQSG 339
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 367 EVGQPALEVILAFPGAT 317
+VG PAL++ LAFP AT
Sbjct: 15 KVGLPALDISLAFPQAT 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,496
Number of Sequences: 37544
Number of extensions: 207555
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -