Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331F02f
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56965-11|AAB52666.1| 137|Caenorhabditis elegans Hypothetical p... 30 0.53
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 28 2.1
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 28 2.1
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 28 2.8
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 28 2.8
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 28 2.8
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 27 3.7
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 3.7
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 27 5.0
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 27 5.0
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 27 6.5
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 27 6.5
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 27 6.5
AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear recep... 27 6.5
U88168-7|AAC24396.2| 132|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-l... 26 8.7
AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensor... 26 8.7
>U56965-11|AAB52666.1| 137|Caenorhabditis elegans Hypothetical
protein C15H9.9 protein.
Length = 137
Score = 30.3 bits (65), Expect = 0.53
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 104 SEPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCDKNAGATFPYLTASKSVCKKEK 283
S ++C+ C+SN NP C+ D G F+ + C TF A C+K
Sbjct: 17 SANISCYQCTSNENPTCD-----ANDDGALEAFK-KTCTPLTEGTFKGNAAVG--CRKIT 68
Query: 284 KYIDGELVVSRGCTW 328
+ ++G L V R C +
Sbjct: 69 QSVEGVLSVVRECAY 83
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 28.3 bits (60), Expect = 2.1
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Frame = +2
Query: 113 VNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLE---------NCDKNAGATFPYLTASKS 265
+NC C PLC+ N D ++ L N D N A P L A +
Sbjct: 101 LNCEFCKKGHEPLCHHIQNYGFDRSGTFQEYLTIRGVDAAKINKDTNLAAAAPILCAGVT 160
Query: 266 VCK--KEKKYIDGELVVSRG 319
V K KE G+++V G
Sbjct: 161 VYKALKESNVAPGQIIVLTG 180
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -3
Query: 380 CFVSGSRATGFGSHPGVSRCNHDSQLIHHQCISFLS----CIQTSKLSNKER*LQHSCRS 213
C + G+ +CN + LI++QC + +S C + + L C+
Sbjct: 485 CPTGSTNVNGYCQGGSNGQCNSNQVLINNQCYNTVSIGFQCQFAQQCLGNSQCLNSICQC 544
Query: 212 FRGGTNKNSRCRYG 171
G +N N C+ G
Sbjct: 545 PSGSSNVNGYCQGG 558
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 248 LTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFQSRLPYFQKRSKRS 388
LTA+K + KE + + + RQD+F RL Q +SKRS
Sbjct: 280 LTAAKMLYTKELEALRDHEEALKEELLARQDEFHDRLQELQLQSKRS 326
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 245 YLTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFQSR 355
Y S + CKK KK EL+ + GC W ++ R
Sbjct: 811 YDITSWATCKKNKK---AELISNDGCRWTKEHQINKR 844
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 245 YLTASKSVCKKEKKYIDGELVVSRGCTWKRQDDFQSR 355
Y S + CKK KK EL+ + GC W ++ R
Sbjct: 811 YDITSWATCKKNKK---AELISNDGCRWTKEHQINKR 844
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 144 IRCATILLISVSTPGI-LICSASKTATRMLEL 236
+RC T+L+ S+S PGI L C A T +L
Sbjct: 271 LRCFTMLITSLSVPGIHLQCEARPNTTMQEKL 302
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 150 CATILLISVSTPGILICSA 206
C ++LIS+STP L+C+A
Sbjct: 710 CMILVLISISTPIFLVCAA 728
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 277 FLAYRLRS-CQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 137
F A LRS IR S++ ++ + +++ G D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 277 FLAYRLRS-CQIRKGSSSILVAVFEAEQIRIPGVDTDIKRIVAQRIHV 137
F A LRS IR S++ ++ + +++ G D+ R+V+QR+++
Sbjct: 729 FKAEILRSGTMIRSPSAARFESLLQQRHVQLLGRSVDLNRVVSQRVNM 776
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 389 HFVCFVSGSRATGFGSHPGVSRCN 318
+ VC V G +A FG H GV+ CN
Sbjct: 95 NLVCVVCGDQA--FGKHYGVNACN 116
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 389 HFVCFVSGSRATGFGSHPGVSRCN 318
+ VC V G +A FG H GV+ CN
Sbjct: 95 NLVCVVCGDQA--FGKHYGVNACN 116
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 389 HFVCFVSGSRATGFGSHPGVSRCN 318
+ VC V G +A FG H GV+ CN
Sbjct: 69 NLVCVVCGDQA--FGKHYGVNACN 90
>AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 454
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 389 HFVCFVSGSRATGFGSHPGVSRCN 318
+ VC V G +A FG H GV+ CN
Sbjct: 34 NLVCVVCGDQA--FGKHYGVNACN 55
>U88168-7|AAC24396.2| 132|Caenorhabditis elegans Hypothetical
protein K11H12.6 protein.
Length = 132
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 104 SEPVNCWACSSNVNPLCNDPF 166
S P+NC+ C+S P C D +
Sbjct: 14 SAPLNCYICNSKKQPDCIDNY 34
>AF295927-1|AAL83724.1| 377|Caenorhabditis elegans paraoxonase-like
protein MEC-6 protein.
Length = 377
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 299 HHQCISFLSCIQTSKLSNKE 240
+HQCI F +++SKL++++
Sbjct: 148 NHQCIHFFQIVESSKLNHRK 167
>AF003141-2|AAK21482.2| 377|Caenorhabditis elegans Mechanosensory
abnormality protein6 protein.
Length = 377
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 299 HHQCISFLSCIQTSKLSNKE 240
+HQCI F +++SKL++++
Sbjct: 148 NHQCIHFFQIVESSKLNHRK 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,797
Number of Sequences: 27780
Number of extensions: 195934
Number of successful extensions: 489
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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