Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331F01f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p pro...   145   4e-35
AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA...   145   4e-35
X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal  pro...   137   1e-32
BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p pro...    61   1e-09
AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p pro...    30   1.7  
AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA p...    30   1.7  
AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-P...    29   2.9  

>AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p
           protein.
          Length = 252

 Score =  145 bits (351), Expect = 4e-35
 Identities = 75/132 (56%), Positives = 92/132 (69%)
 Frame = +2

Query: 125 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 304
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 305 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 484
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 485 VFVRLNKATVNM 520
           VF++LNKAT+NM
Sbjct: 124 VFIKLNKATINM 135


>AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA
           protein.
          Length = 252

 Score =  145 bits (351), Expect = 4e-35
 Identities = 75/132 (56%), Positives = 92/132 (69%)
 Frame = +2

Query: 125 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 304
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 305 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 484
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 485 VFVRLNKATVNM 520
           VF++LNKAT+NM
Sbjct: 124 VFIKLNKATINM 135


>X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal
           protein protein.
          Length = 239

 Score =  137 bits (331), Expect = 1e-32
 Identities = 70/122 (57%), Positives = 86/122 (70%)
 Frame = +2

Query: 155 LPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 334
           LPAVPES LK             +  LK+ +    +K+E   RAE+Y  EY   E+ EI+
Sbjct: 1   LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYIKAEQREIK 60

Query: 335 LARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATV 514
           L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNGVF++LNKAT+
Sbjct: 61  LRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATI 120

Query: 515 NM 520
           NM
Sbjct: 121 NM 122


>BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p
           protein.
          Length = 227

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = -2

Query: 520 HIHSSLIQTYKHTIVYLAQSKQLQNFTDLR*NLVDTTDSDDKCQFGFPGNVVVATIACLS 341
           H+   L+Q  +HT+V L Q++QLQN  DL  +LVDT D+DDK QFG  G+V +  +   +
Sbjct: 62  HVDGGLVQLDEHTVVDLPQTEQLQNLADLGSHLVDTADTDDKGQFGLGGHVELVALLGQA 121

Query: 340 G*SDFITF-LDAVFLDVL 290
              D   F LD + L +L
Sbjct: 122 TQLDLALFRLDVLILVLL 139


>AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 221 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 397
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 398 VIRIRG 415
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 221 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 397
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 398 VIRIRG 415
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-PA
           protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 224 QVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRL 337
           ++ +  +   ++K +EI++    YV+EYR ++ +E RL
Sbjct: 367 ELRILEQKKLLQKHKEIYEERMTYVQEYRAQKEEEQRL 404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,292
Number of Sequences: 53049
Number of extensions: 361702
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)