Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.2  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   3.9  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   5.2  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   6.8  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    25   9.0  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 261  NFKLKKSKKYIK--MTFSSNKPSNRNYN 184
            NF  K   KY+K  +TFS+N  +N N+N
Sbjct: 946  NFWSKNECKYVKSNITFSANDSANYNWN 973


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 270 RLRNFKLKKSKKYIKMTFSSNKPSNRNYNLMTK 172
           +L   +LK  +K ++++  +NK S+RN  L+T+
Sbjct: 57  KLEEERLKYEEKKLRISRLANKESSRNEELLTE 89


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 279 LYYFIFMTRRKLFTFNTTSKKKR-IKLIYDLDHSKASIYNMYFKM 410
           +Y FIF T R L +    S  KR I +I+ L HS     N+ + M
Sbjct: 89  IYKFIFKTARLLLSSTYGSSAKRPIDIIHQL-HSSMENKNVRYSM 132


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 476 CIDYVENSTSFNSIAFELS*RLHFKVHI 393
           C++Y  N   +  +AF L   +HFK+H+
Sbjct: 576 CMEYKNNI--YKEVAFVLGEIIHFKLHV 601


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 90  LKMKFNDETLKK*VY*KLKCIENVHVHVLSLGYNFG*MVYLKRM 221
           L MK   E +       LK I   +VH   +GYNF  ++ L+++
Sbjct: 54  LSMKCYPELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,370
Number of Sequences: 5004
Number of extensions: 32360
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)