Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   3.5  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   3.5  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    28   3.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   3.5  
Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    27   8.1  

>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 443 NSIAFELS*RLHFKVHIVNGSFGMI*IINKFYSFLFRSSIKSKKFTSSHKNKVVEV 276
           NS  F  + R   KV I+N +FG     + FYS  F   + S + ++S K KVV+V
Sbjct: 13  NSQTFLFTLRNSEKVSILNNNFGSR---STFYSLQFLYYVFSHRMSASQKQKVVKV 65


>U41995-6|AAA83463.2|  419|Caenorhabditis elegans Hypothetical
           protein E02C12.6 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 258 FKLKKSKKYIKMTFSSNKPSNRNYNLMTKHAHAHFRCTSVFNIPIF 121
           F  +K KK+ K+T  S+      Y ++TK  H     T V+++  F
Sbjct: 98  FTEEKLKKFSKLTRKSHNIEVETYKVLTKFNHPDIPYTKVYSLKPF 143


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267  LRNFKLKKSKKYIKMTFSSNKPSNRNYNLMTKHAH 163
            +R  KLKK    I  T S+ K ++ N  L TKH +
Sbjct: 1060 VRRPKLKKENTTIGCTISNQKATSANAELTTKHVN 1094


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267  LRNFKLKKSKKYIKMTFSSNKPSNRNYNLMTKHAH 163
            +R  KLKK    I  T S+ K ++ N  L TKH +
Sbjct: 1060 VRRPKLKKENTTIGCTISNQKATSANAELTTKHVN 1094


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267  LRNFKLKKSKKYIKMTFSSNKPSNRNYNLMTKHAH 163
            +R  KLKK    I  T S+ K ++ N  L TKH +
Sbjct: 1060 VRRPKLKKENTTIGCTISNQKATSANAELTTKHVN 1094


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267  LRNFKLKKSKKYIKMTFSSNKPSNRNYNLMTKHAH 163
            +R  KLKK    I  T S+ K ++ N  L TKH +
Sbjct: 1060 VRRPKLKKENTTIGCTISNQKATSANAELTTKHVN 1094


>Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical
           protein K02E11.1 protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 288 SSRGFERLRNFKLKKSKKYIKMTFSSNKPSN 196
           SSR  +RLR+ K  +S+K +K + S+ K  N
Sbjct: 22  SSRASKRLRSSKSTRSRKSVKPSKSNKKAEN 52


>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 338 FRSSIKSKKFTSSHKNKVVEVSNDLET 258
           FRS   +KKF   H N+ + + ND ET
Sbjct: 135 FRSFADAKKFWEEHHNEPILLPNDPET 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,968
Number of Sequences: 27780
Number of extensions: 175690
Number of successful extensions: 362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)