Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.36 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.7  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 210 NKPSNRNYNLMTKHAH--AHFRCTSVFNIPIFLM 115
           N+  N+N N  T H H   H R T   N+ + L+
Sbjct: 113 NQYKNQNNNHYTSHQHLRTHLRGTLTVNVSVLLL 146


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 511 CIFSIYNGRKFIV*TMLKIRRVS 443
           CIF   NGR + V TM  I++ S
Sbjct: 498 CIFRTANGRGWGVKTMKTIKKGS 520


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -3

Query: 273 ERLRNFKLKKSKKYIKMTFSSNKPS-----NRNYNLMTKHAHAHFRCTSVFNI 130
           ER RN   ++  K  K+  ++N  S     N NYN    + + +++    +NI
Sbjct: 65  ERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,385
Number of Sequences: 438
Number of extensions: 2548
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)