Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E05f
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   3.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   6.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    23   8.6  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    23   8.6  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 255 LYTKKVTILRSKSYFTINYIHTHIFCYIKFISLFTN 148
           +Y  +  +LRS +Y T N+     F Y   I+L T+
Sbjct: 42  IYVPRHCLLRSLTYATTNFTKFSKFVYYLAITLHTS 77


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 216 YFTINYIHTHIFCYIKFISLFTNKFFVVKLFS 121
           YFT  YI T I   I  +  +    F+  +FS
Sbjct: 292 YFTFKYITTCIHANIDIVHFYLETPFLAGIFS 323


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 207 INYIHTHIFCYIKFISLFTNKFFVVKLFSFT 115
           +NY +   F  I+ +S FTN  F+V L SF+
Sbjct: 404 LNYAYPFGFAKIEALSGFTNGIFLV-LISFS 433


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 213 FTINYIHTHIFCYIKFISLFTNKFFVVKLF 124
           FTIN       C   F+S   ++ FV+KLF
Sbjct: 121 FTINPGSEEKICCESFVSYQRSERFVIKLF 150


>SPBC119.04 |mei3||meiosis inducing protein Mei3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 66 NAAQTARRYLSPRSSSSGRAT 4
          N   TARR  SPR+S+   +T
Sbjct: 21 NRTNTARRSTSPRTSTGSSST 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,204,829
Number of Sequences: 5004
Number of extensions: 19144
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)