Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E05f
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine rec...    31   0.25 
U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine rec...    27   3.1  
U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine rece...    27   3.1  
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    26   7.2  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    26   7.2  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    26   7.2  
AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical...    26   7.2  
AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical...    26   7.2  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform b protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 225 SKSYFTINYIHTHIFCYIKFISLFTNKFFVVKLFSFTSQQVQI 97
           S +Y TI  +    +  I  +S+F N+FF++  FSF    V +
Sbjct: 96  SLAYQTIIILILFAYMVISIVSIFENRFFIICTFSFKHHWVYL 138


>U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform a protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 174 IKFISLFTNKFFVVKLFSFTSQQVQI 97
           I  +S+F N+FF++  FSF    V +
Sbjct: 3   ISIVSIFENRFFIICTFSFKHHWVYL 28


>U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein193 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 216 YFTINYIHTHIFCYIKFISLFTNKFFVVKLFSF 118
           Y TI  +    +  I  +S+F N+FF +  FSF
Sbjct: 99  YQTIIMMSLFAYMVISIVSIFENRFFNICTFSF 131


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 233 MVTFLVYNFLKKKKKNSRGGPVPNSPYSES 322
           +VT++ Y F  KKK  SR   V  S Y +S
Sbjct: 205 LVTYITYRFKLKKKVLSRRTSVAGSKYLDS 234


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 258 KLYTKKVTILRSKSYFTINYIHTHIFCYIKFISLF 154
           KL+   V   R    FT  + +   FC IKFIS F
Sbjct: 233 KLFKNHVCCFRKYCNFTQLFQNECTFCNIKFISFF 267


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 107 KSRY*KRAQSANVSTRRRRHGVTCRPDLH 21
           K R+ ++A+  NV   RRR+  + RP+ H
Sbjct: 15  KKRFMQQAKKNNVFKARRRNNFSKRPNFH 43


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -3

Query: 198 IHTHIFCYIKFISLFTN-------KFFVVKLFSFTSQQVQILEACAER 76
           I   +FCY+  ++ FTN        F ++    +T   ++IL AC E+
Sbjct: 565 ISLQLFCYVPKLNKFTNFAVAFMSMFQIITQEGWTDVVIEILRACNEQ 612


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -3

Query: 198 IHTHIFCYIKFISLFTN-------KFFVVKLFSFTSQQVQILEACAER 76
           I   +FCY+  ++ FTN        F ++    +T   ++IL AC E+
Sbjct: 543 ISLQLFCYVPKLNKFTNFAVAFMSMFQIITQEGWTDVVIEILRACNEQ 590


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -3

Query: 198 IHTHIFCYIKFISLFTN-------KFFVVKLFSFTSQQVQILEACAER 76
           I   +FCY+  ++ FTN        F ++    +T   ++IL AC E+
Sbjct: 565 ISLQLFCYVPKLNKFTNFAVAFMSMFQIITQEGWTDVVIEILRACNEQ 612


>AL117203-18|CAN86630.1|  332|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17c protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 226 PQNGHFFSVQFF 261
           PQNG+FFS +FF
Sbjct: 307 PQNGNFFSAKFF 318


>AL117203-16|CAB60421.1|  412|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17a protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 226 PQNGHFFSVQFF 261
           PQNG+FFS +FF
Sbjct: 307 PQNGNFFSAKFF 318


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 240 VTILRSKSYFTINYIHTHIFCYIKFISLFTNKFFVVKLFSFTSQQVQI 97
           +T+L  +++F +     H+FC+   I  F      + LFSF     QI
Sbjct: 379 ITLLDQENFFVL-----HLFCFYHNIKYFFYYIIFMLLFSFNLNYNQI 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,820,908
Number of Sequences: 27780
Number of extensions: 111539
Number of successful extensions: 247
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)