Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331E01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 256 1e-69
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 188 4e-49
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 166 2e-42
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 151 5e-38
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 148 6e-37
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 129 3e-31
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 121 6e-29
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 119 3e-28
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 115 4e-27
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 112 3e-26
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 106 2e-24
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 103 1e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 5e-23
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 100 1e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 99 2e-22
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 99 3e-22
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 97 2e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 96 2e-21
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 89 5e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 88 6e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 78 7e-16
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 69 6e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 1e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.002
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.14
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.18
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.32
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 1.7
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.2
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 3.9
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 25 9.0
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 256 bits (628), Expect = 1e-69
Identities = 119/173 (68%), Positives = 141/173 (81%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVH
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
IN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 520
RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI++Q
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ 296
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 188 bits (458), Expect = 4e-49
Identities = 86/161 (53%), Positives = 117/161 (72%), Gaps = 3/161 (1%)
Frame = +2
Query: 41 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 220
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 221 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 400
IA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
Query: 401 IDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II
Sbjct: 553 IDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRII 593
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 166 bits (403), Expect = 2e-42
Identities = 83/174 (47%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
+EEA P + + +K + YKEP+ IQ P+ + K+L+G+A+TGSGKT A+I+P I+
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 182 INNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 352
I+ PP+ + GP A+VLAPTRELAQQIQ F R V GG EQ+
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 353 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
+ +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+
Sbjct: 371 QMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKIL 424
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 151 bits (367), Expect = 5e-38
Identities = 78/177 (44%), Positives = 112/177 (63%), Gaps = 13/177 (7%)
Frame = +2
Query: 26 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP-- 196
++ Q +K GY +PTP+Q PI SG++L+ AQTGSGKT ++ P + + + P
Sbjct: 179 HLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAA 238
Query: 197 -PIRRGDG---------PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 346
P+ + G P L+LAPTREL QI + + F + S+VR V+GGA R Q
Sbjct: 239 VPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Query: 347 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR I+E
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 148 bits (358), Expect = 6e-37
Identities = 76/171 (44%), Positives = 111/171 (64%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +PA+ +
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+N + P LV++PTRELA Q + + ++ V+GGAPK EQAR
Sbjct: 227 LNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AA 283
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
+ ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR II
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNII 334
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 129 bits (311), Expect = 3e-31
Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 182 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 358
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 359 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM F P I KI++
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKILK 215
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 121 bits (292), Expect = 6e-29
Identities = 68/176 (38%), Positives = 112/176 (63%), Gaps = 4/176 (2%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-- 175
F + + +Q+ +K MG++ T IQ + P ++G++++G A+TGSGKTLA+++P I
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 176 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 355
++ P R G G ++++PTRELA QI VA + + V GGA +R +A
Sbjct: 151 LYALKFKP-RNGTG--VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 356 LERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GFE ++R+I++
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIMK 262
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 119 bits (286), Expect = 3e-28
Identities = 61/171 (35%), Positives = 96/171 (56%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
+IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 115 bits (277), Expect = 4e-27
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 362 RGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
+ +IVIATPGR ID + ++ +V+DEADRML+ GF ++ +II+
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 112 bits (270), Expect = 3e-26
Identities = 58/171 (33%), Positives = 94/171 (54%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
V IV+ TPGR++D KG + CT V+DEAD++L F P I +++
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 106 bits (254), Expect = 2e-24
Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Frame = +2
Query: 50 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 217
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 218 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 388
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 389 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
PGRL D LE ++ + ++VLDE DR++DMGFE + KI+
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 103 bits (248), Expect = 1e-23
Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 10/183 (5%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GA 331
+ + G G AL++APTRELA QI V + G V + + G G
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 332 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 511
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMGF+ ++ I
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 512 IEQ 520
I Q
Sbjct: 179 ISQ 181
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (243), Expect = 5e-23
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 4/167 (2%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 362 RGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGF 490
+ +V+ATPGRL D + E+ L+R +LV+DEADR+L F
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 100 bits (240), Expect = 1e-22
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT AY++P +
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 182 INNQPPIRRGD-GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQAR 352
+ Q I G AL+L PTRELAQQ+ V + ++R V + Q
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 353 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 511
L +IVIATP R + + G L + +LV+DEAD ML G+ ++ +
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 99 bits (238), Expect = 2e-22
Identities = 56/172 (32%), Positives = 91/172 (52%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + + +
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
I+ +++ AL+LAPTRELAQQIQ+V G V GG R+ L+
Sbjct: 81 IDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQ 135
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI I +
Sbjct: 136 AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 99.1 bits (236), Expect = 3e-22
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
F E + +K + T IQ Q P A+ G++++G A+TGSGKTLA+I+P I +
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+ + DG ALV++PTRELA Q + G + GG +E+ L
Sbjct: 101 LYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLS 159
Query: 362 RGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKII 514
R + I++ TPGRL+ +++ + L+LDEADR+LDMGF + I+
Sbjct: 160 R-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 96.7 bits (230), Expect = 2e-21
Identities = 55/170 (32%), Positives = 89/170 (52%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
FEE N + + +G+ GY+ P+ +Q++ G++++ AQ+G+GKT + + +
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
I+ +R AL+L+PTRELA QIQ V G V+ GG + L+
Sbjct: 83 IDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Query: 362 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 511
G +V TPGR+ D + + + L+LDEAD +L+ GF+ QI I
Sbjct: 138 YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDI 187
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 96.3 bits (229), Expect = 2e-21
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Frame = +2
Query: 53 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 226
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 227 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 406
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 407 FLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
+ + T N ++ LVLDEADR+L ++ K++E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLE 294
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 88.6 bits (210), Expect = 5e-19
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Frame = +2
Query: 5 EEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
E A+ + + G+++ TP+Q + + + +N V A+TG+GKTLA++L A
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKD 100
Query: 182 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
+ P +++L+PTRELA QI + A + + +R + GG K + +
Sbjct: 101 VLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIR 160
Query: 362 RG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIE 517
RG ++IATPGRL D L+ T +LDEADR++DMGF I I E
Sbjct: 161 RGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHE 214
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 88.2 bits (209), Expect = 6e-19
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 2/162 (1%)
Frame = +2
Query: 2 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYILPAI 175
FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L +
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 176 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 355
++ P P A+ LAP+RELA+QI V + G + V+ FG K +
Sbjct: 176 SRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKG 226
Query: 356 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 481
+ +IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 227 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 78.2 bits (184), Expect = 7e-16
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Frame = +2
Query: 17 FPDYVQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 193
FP+ + + +K E T IQ P S ++L+ A TGSGKT+AY+ P + +
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH 111
Query: 194 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGV 370
P G A+++APTREL +QI + A + ++ + K +E+A L
Sbjct: 112 VP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY 167
Query: 371 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 514
++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 168 DMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHIL 214
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 68.5 bits (160), Expect = 6e-13
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Frame = +2
Query: 92 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 271
P+ G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q+ +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
Query: 272 VAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NL 433
+ + ++ G R + L E ++++++TPGRL+D + + +L
Sbjct: 224 TFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSL 283
Query: 434 QRCTYLVLDEADRMLDMGFEPQIRKII 514
Q Y+V+DEADR+LD F+ + ++
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVM 310
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 67.7 bits (158), Expect = 1e-12
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Frame = +2
Query: 35 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 214
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 215 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIV 379
G ++ LVL TRELA QI+ A F + VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 380 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 481
+ATPGRL + + + + VLDE D++L+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 113 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 265
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 113 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 265
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 101 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 259
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.18
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +2
Query: 215 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 394
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 395 RLIDFLEKGTTNLQRCTYL 451
RL+ ++ + NLQR +++
Sbjct: 150 RLLMNKDEISLNLQRLSHM 168
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.32
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 110 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 289
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 290 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 466
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 467 DR 472
R
Sbjct: 199 HR 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 50 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 190
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
Score = 25.0 bits (52), Expect = 6.8
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 23 DYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 199
D V +G+ + +Q Q + I + N+ A TGSGKT+A L ++N P
Sbjct: 1121 DPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPK 1180
Query: 200 IRRGDGPIALVLAPTRELAQQIQQVAADFGH 292
+ + +AP + L +++ D+GH
Sbjct: 1181 SK------VVYIAPMKAL---VKERVKDWGH 1202
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 218 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 361
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 38 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 214
GV +GY + P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 279 GVVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 275 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 442
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 443 TYLVLDE 463
TY V E
Sbjct: 275 TYQVSGE 281
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 397 STWSSNDYFYSPLQVP 350
S W+SND +Y P P
Sbjct: 95 SAWNSNDPYYDPKSTP 110
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 214 WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCV 321
WSD F Y+R +T +A+ + H + + H+ V
Sbjct: 8 WSDQFSESFYERATTLLTAALNKGTKHSMIADHITV 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,902
Number of Sequences: 5004
Number of extensions: 49937
Number of successful extensions: 209
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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