Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331E01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      140   8e-36
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    26   0.20 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  140 bits (339), Expect = 8e-36
 Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
 Frame = +2

Query: 2   FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 181
           FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQTGSGKT A+ +P I  
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 257

Query: 182 INNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 349
           +  +            P  ++++PTREL  QI Q    F   S ++    +GG     Q 
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 317

Query: 350 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 517
             L  G  I++ATPGRL+DF+EKG        +LVLDEADRMLDMGF P I K+++
Sbjct: 318 GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVD 373


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 64  TDAHSSSRLADSYVWKEFSWRSPNGFRQNVGLHLASH 174
           +D+ +  +L + Y WK   +  PNG+ +   +   S+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGYAKLAAIKSGSY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,705
Number of Sequences: 438
Number of extensions: 3595
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)