Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   2.2  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   3.0  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   3.9  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   5.2  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   5.2  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   6.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   6.8  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 368 LLYMDKLKIENGLKALGYTNDDIPDLVKGALPQDRLLKIAPVT 240
           LL +D LKIE    ++G +   +  L  GAL   R+ +IA ++
Sbjct: 203 LLLLDHLKIEKLYASVGSSLGGMQSLTLGALAPHRVGRIASIS 245


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +1

Query: 280 APLTKSGMSSLVYPNAFNPFSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFS 459
           APL++     L        F IFN+S+  +   ++I+   F      SAP  + A+  F+
Sbjct: 191 APLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAA-AFA 249

Query: 460 GSLDAVNRKTAGAVIT 507
              D  + K  G  IT
Sbjct: 250 ---DMYSNKHRGTAIT 262


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 301 MSSLVYPNAFNPFSI-FNLSIYKSMTSES--ILPASFLLALVTSAP 429
           MSS+   N+FNPF + F+L  Y  +      +L   F+ A+++  P
Sbjct: 1   MSSVETRNSFNPFRVLFDLGSYGWLHPSRLLLLEIPFVFAIISKVP 46


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 376 SESILPASFLLALVTSAPSRLAASRCFSGSLDAVNRKTAGAVI 504
           S S LP+SF + +VT A S   +      ++  V+  T GAVI
Sbjct: 142 STSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVI 184


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 337 FSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGSLDAVNRKTAGAVIT 507
           F IFN+S+      ++I+   F      SAP  + A    +   D  + K  G  IT
Sbjct: 211 FGIFNISVAVGKDIQTIMMCRFFAGFFASAPLTVVA----AALADMYSNKYRGTAIT 263


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 333 SVFNLQLIHIQEYDVGEYSTGVFSLSVGDVSS 428
           +VF + L H+ ++DV +Y   V++L V  V S
Sbjct: 30  AVFRVPL-HVNKFDVRDYLQHVYNLKVVSVKS 60


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 330 QSVFNLQLIHIQEYDVGEYSTGVFS 404
           QSV N Q + I++ +VG++  G  +
Sbjct: 474 QSVLNQQFLRIEDIEVGQFVDGTIA 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,414
Number of Sequences: 5004
Number of extensions: 31240
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)