Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   4.0  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    28   5.2  
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871     27   6.9  
06_01_0848 - 6463100-6463293,6463983-6465144                           27   6.9  
02_01_0498 - 3614621-3614674,3614780-3617161                           27   9.1  
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530...    27   9.1  

>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 383 LSDVIL-LYMDKLKIENGLKALGY--TNDDIPDLVKGALPQDRL 261
           ++D+ L LY +      GLKALGY   ND+    V G LP D L
Sbjct: 448 IADMCLELYKEYGTTMAGLKALGYEFDNDEFHANVHGTLPYDNL 491


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 323 LGYTNDDIPDLVKGALPQD 267
           LG+T  D PDLVK  LP D
Sbjct: 408 LGHTPQDHPDLVKSGLPGD 426


>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
          Length = 148

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 320 GYTNDDIPDLVKGALPQDRLLKIAPVT 240
           GY     PDL+ G  P+D L K A +T
Sbjct: 18  GYGGGGGPDLIGGCQPRDALAKAATIT 44


>06_01_0848 - 6463100-6463293,6463983-6465144
          Length = 451

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -1

Query: 518 GLSVVMTAPAVFRFTASSDPEKHLEAASLLGADVTNAKRKDAGRILSDVILLY----MDK 351
           G+S+       F     S P KHLE A +L A+   AK+    R+ ++ ++++     +K
Sbjct: 193 GISIADRPSYAFASRVISRPTKHLEEAVVL-ANEFGAKQ--GTRVFTNAVMIFGILGQEK 249

Query: 350 L-KIENGLKALGYTNDDI 300
           L K     K LG++ DD+
Sbjct: 250 LAKKLEFFKKLGWSQDDL 267


>02_01_0498 - 3614621-3614674,3614780-3617161
          Length = 811

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 352 LSIYKSMTSESILPASFLLALVTSAPSRLAA 444
           + +Y  M +E +LP  F LA V SA   LAA
Sbjct: 126 VEMYGRMRAEGLLPTHFTLASVLSACGGLAA 156


>01_05_0268 -
           20251413-20251565,20252420-20252674,20252905-20253055,
           20253161-20253398,20253966-20254067,20254382-20254611,
           20255599-20255724,20256056-20256828
          Length = 675

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 328 FNPFSIFNLSIYKSMTSESILPASFLLALVTSAP---SRLAASRCFSGSLDAVNRKTAGA 498
           F+   I N+   + + +  I+  + +L  +TS P    R  A+  F+G L  +     G 
Sbjct: 123 FSDTDILNMDSVRRLNTSEIVHGALVLMNLTSEPMLPGRSTATANFTGFLKTMLTDVVGQ 182

Query: 499 VITTDR 516
           V++T R
Sbjct: 183 VLSTRR 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,803
Number of Sequences: 37544
Number of extensions: 179394
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)