Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    27   1.7  
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    27   2.2  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   3.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   5.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   6.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.0  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   9.0  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = +2

Query: 173 NNMVNEAYKNRISFAEIQN 229
           +N++++ +KNRI +A++QN
Sbjct: 102 SNLLDDCFKNRIEYAKLQN 120


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 323 EDMLYVSRALKSKWLLDPAHEAIMTPQWLEDELFPTMXTTAVSKMKNWL 469
           E +L VSR +KS WL +    +  T  + E +L     T  ++K++N L
Sbjct: 68  EQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRT--LTKLQNHL 114


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +2

Query: 128 ITLTEPNLGK-RQFQLNNMVNEA--YKNRISFAEIQNLPEKSPVDRLFKIDMASKLRNVD 298
           I LTE    +  +  L+N+  E   + N   F  I     +SP+DR   ID  +    V+
Sbjct: 300 IDLTEQEKKQPNESNLSNLKIETVLFSNCTVFLLIDTREIRSPLDRNLIIDKLTNDFGVN 359

Query: 299 FIIQNLRDEDMLYVSRALKS 358
             +++L   D L+V+R ++S
Sbjct: 360 CQVRSLELGDALWVARDMES 379


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 410 EDELFPTMXTTAVSKMKNWLYLNLKD 487
           E+E+   +  +AV   K W+YL+ KD
Sbjct: 62  EEEMRTLLVASAVKDAKGWVYLSGKD 87


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 269 DMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLD 373
           D+   L  + ++++N  DED  Y+  ALK + L+D
Sbjct: 632 DVLLDLDGLQYLVKN--DEDYSYLQEALKDEPLMD 664


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 329 YLHLGGFGL*SLRFAVWTPC 270
           YLH+G   L ++   +WTPC
Sbjct: 401 YLHVGELLLSNIENHLWTPC 420


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 220 NSEFTGEVSSR*IIQDRHGVQTAKRRLHN 306
           +SEFT E+    ++ D H  +T ++R  N
Sbjct: 516 DSEFTSEIPMDSVVADSHLSETVQQRFAN 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,413
Number of Sequences: 5004
Number of extensions: 39591
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)