Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331D10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 29 1.7
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732... 29 2.3
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 29 3.0
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 28 5.2
03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314 28 5.2
11_01_0762 + 6400052-6401845,6401977-6402609 27 6.9
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 27 6.9
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 27 9.1
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +2
Query: 269 DMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAIMTPQWLEDELFPTMXTTAV 448
++ S ++++ +I+NL D + AL S D A +A+ +LED+ M T AV
Sbjct: 175 EILSITQDLESVIENLCDYIGRVPTSALGSNAYTDGAVKALSVRGFLEDD----MLTNAV 230
Query: 449 SKMKNWLYLNLKDELRXQKFYQ 514
+ M N Y + + R +F Q
Sbjct: 231 NSMPNRKYFHDSNMPRLVEFLQ 252
>01_01_0926 +
7324145-7324561,7324773-7324778,7325255-7325311,
7325572-7325661,7325938-7325982,7326088-7326142,
7326245-7326288,7326401-7326790,7327276-7327541,
7328292-7328430,7328514-7328564,7329158-7329642,
7329724-7330327,7330717-7331025
Length = 985
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 433 HCRKQFIFQPLGR-HNSLMSRVQQPLRLQCSTHIQHIFISEVLDYEVYVSQFG 278
H + F Q L R + + P ++ C H+ ++E LDY+ ++ +FG
Sbjct: 394 HMHELFSLQSLIRFYEDSSEQAGSPKKVNCVIHLGPSSVTEALDYQNWMRKFG 446
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 233 PEKSPVDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALKSKWLLDPAHE 385
P SP + +++ +L +V +++L+ D++YVS L S +DP+ E
Sbjct: 95 PSSSPSNFRVTLNLQGELAHVS--LKHLKQNDLVYVSGLLNSYHKVDPSGE 143
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 248 VDRLFKIDMASKLRNVDFIIQNLRDEDMLYVSRALK 355
+DR F + K+ VD Q R+E M Y + LK
Sbjct: 183 IDRQFSEETIPKMMEVDKSTQGTREEQMFYNRKTLK 218
>03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314
Length = 429
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 134 LTEPNLGKRQFQLNNMVNEAYKNRISFAEIQNLPEKSPVDR 256
L +LG+R F + ++N +S AE +PE S + R
Sbjct: 134 LPRNHLGRRSFMSKPVYPLVFRNPVSEAEASGMPEASNIGR 174
>11_01_0762 + 6400052-6401845,6401977-6402609
Length = 808
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 397 RHNSLMSRVQQPLRLQCSTHIQHIFISEVLD 305
RH ++ + + + L C H+ F+ +VLD
Sbjct: 571 RHRTISAEILENLCTHCKEHVDQTFLQKVLD 601
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 163 LTFSQVRFCKRDRAHHRDHICHFP 92
L +V+ C + HH +H CH P
Sbjct: 931 LEVEEVKDCHAEPPHHHNHCCHEP 954
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +2
Query: 236 EKSPVDRLFKIDMASKLRN-VDFIIQNLRDEDMLYVSRALKSKWLLDPAHEAIMTPQWLE 412
E+ + L +M ++LR+ +D + + +L +SRA + P + T L
Sbjct: 433 ERGHLGLLSTEEMQNQLRDWLDLSLNHSVPSSLLILSRAFTMSGKMKPEEAVVATLSSLP 492
Query: 413 DELFPTMXTT-----AVSKMKNWL-YLNLKDEL 493
DE+ T+ T +VS K L +L +++EL
Sbjct: 493 DEVVDTVGTVLPSEDSVSDRKRKLEFLEMQEEL 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,558
Number of Sequences: 37544
Number of extensions: 224383
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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