Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106591-2|AAC78238.1|  263|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   4.7  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF106591-2|AAC78238.1|  263|Caenorhabditis elegans Hypothetical
           protein T01A4.2 protein.
          Length = 263

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 104 NMIPMMCPITLTEPNLGKRQFQLNNMVNEAYK 199
           N IP++ PI LT     KR++QL   +N  YK
Sbjct: 143 NGIPIITPIGLTMSLDDKREYQLMTRINSPYK 174


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 394  HNSLMSRVQQPLRLQCST--HIQHIFISEVLDYEVY 293
            H  ++S V++ L  +C    H+QH+F   V +Y VY
Sbjct: 2049 HLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVY 2084


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 394  HNSLMSRVQQPLRLQCST--HIQHIFISEVLDYEVY 293
            H  ++S V++ L  +C    H+QH+F   V +Y VY
Sbjct: 2055 HLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVY 2090


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 394  HNSLMSRVQQPLRLQCST--HIQHIFISEVLDYEVY 293
            H  ++S V++ L  +C    H+QH+F   V +Y VY
Sbjct: 2055 HLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVY 2090


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 394  HNSLMSRVQQPLRLQCST--HIQHIFISEVLDYEVY 293
            H  ++S V++ L  +C    H+QH+F   V +Y VY
Sbjct: 2055 HLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVY 2090


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 173 NNMVNEAYKNRISFAEIQNLPEKSPVDRLFK--IDMASKLRNVDFIIQNLRDEDMLYVSR 346
           +N+V++  K R+  ++IQN  ++ P   LFK  +D++ KL    F   +   +    V  
Sbjct: 5   SNLVSKFQKLRVEASKIQNEFKEKPSYTLFKETLDISEKLLEKQFEFNDEMKQIQQNVMS 64

Query: 347 ALKS 358
            LKS
Sbjct: 65  ELKS 68


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 79  DDKVKENDKYDPDDVPYHAYRTEPGK 156
           DDK   N + D DD   H Y  E GK
Sbjct: 544 DDKKSSNSQSDVDDQMLHDYEDEEGK 569


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 79  DDKVKENDKYDPDDVP 126
           DD+++EN+K + DDVP
Sbjct: 532 DDEIEENEKIEVDDVP 547


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 79  DDKVKENDKYDPDDVP 126
           DD+++EN+K + DDVP
Sbjct: 532 DDEIEENEKIEVDDVP 547


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  IFDDKVKENDKYDPDDVPYHAYRTEPGKTSVSTQQHG**SLQKQNFVC*NSEFTGEVSSR 252
           IF+DK   + KY+ D    + YRTE  K  V  +       +  N +  N+    ++S  
Sbjct: 286 IFEDKSAFDVKYEYDGADTNVYRTEYNKLHVQEKDFVDVMCEDINHILTNATLAEDLSFS 345

Query: 253 *IIQD--RHGVQTAKR 294
            +  D  R  V+ A R
Sbjct: 346 LLYADTNRDNVEAADR 361


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  IFDDKVKENDKYDPDDVPYHAYRTEPGKTSVSTQQHG**SLQKQNFVC*NSEFTGEVSSR 252
           IF+DK   + KY+ D    + YRTE  K  V  +       +  N +  N+    ++S  
Sbjct: 286 IFEDKSAFDVKYEYDGADTNVYRTEYNKLHVQEKDFVDVMCEDINHILTNATLAEDLSFS 345

Query: 253 *IIQD--RHGVQTAKR 294
            +  D  R  V+ A R
Sbjct: 346 LLYADTNRDNVEAADR 361


>AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical
           protein C49D10.10 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 155 KRQFQLNNM-VNEAYKNRISFAEIQNLPEKSPVDRLFKIDM 274
           +R+   NN  VN  Y N   FAE  N P  SP++   K D+
Sbjct: 614 QREHPTNNFRVNGIYANMPQFAETFNCPLGSPMNPKKKCDL 654


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,611
Number of Sequences: 27780
Number of extensions: 217589
Number of successful extensions: 534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)