Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 407 LEDELFPTMXTTAVSKMKNWLYLNLKDELR 496
           ++ E FP    T V K+ +W Y   K +LR
Sbjct: 155 IDVEFFPYDVQTCVLKLGSWTYDGFKVDLR 184


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 407 LEDELFPTMXTTAVSKMKNWLYLNLKDELR 496
           ++ E FP    T V K  +W Y   K +LR
Sbjct: 155 IDVEYFPFDEQTCVLKFGSWTYDGFKVDLR 184


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 402 WGVIIAS*AGSNNHFDFSARLTYNISSSRRFWIMKSTFRSLDAMSILNNLST 247
           WGV++ S  G      FSAR+   + +     I+ S   +L A  +L    T
Sbjct: 618 WGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKT 669


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 407 LEDELFPTMXTTAVSKMKNWLYLNLKDELR 496
           ++ E FP    T V K  +W Y   + +LR
Sbjct: 151 IDVEYFPFDEQTCVMKFGSWTYDGFQVDLR 180


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 396 VIIAS*AGSNNHFDFSARLTYNISSSRRFWIMKSTFRSLDAMSI 265
           V +A    S  H DF+   +Y+ SSS    +  +   S+D  SI
Sbjct: 23  VSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDRSSI 66


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 293 VDFIIQNLRDEDMLYVSR 346
           V+FI ++LR+ED+   +R
Sbjct: 451 VEFIAEHLRNEDLYIQTR 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,139
Number of Sequences: 438
Number of extensions: 2628
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)