Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 133 PPVIRQIIILRVFIFITRCYSFTVE 59
           PP IR   +  +F+ +TRCYS T E
Sbjct: 289 PPKIRCFDLFFIFLCVTRCYSDTFE 313


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 172 VVVPTRAELQEVLPPVIRQIIILRVFIFITRCYS 71
           VV    ++LQE+ P VIR+I I+    FI   +S
Sbjct: 191 VVTTMLSQLQEMFPDVIRKIFIVNTPTFIQVLWS 224


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 236 TILEILELISQGGWRIYVVNVYG 304
           T+L I+E+ S+ G RI  VN+ G
Sbjct: 314 TVLTIMEIKSESGLRILAVNILG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,178
Number of Sequences: 27780
Number of extensions: 206157
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)