Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D03f
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 380 PNS---PYRESYYNSLAXVLQRRDXENPGGYPT 469
           PNS   P   S+++ L+  L R    +PG YP+
Sbjct: 275 PNSSLQPSLASHHSHLSSALGRSACHSPGVYPS 307


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -1

Query: 313 FFFFXX*SGSNKIHLFGQPNIVLNRKKFTDSVN 215
           F+ +    G  K HL     ++++  +F+D ++
Sbjct: 173 FYIYPSLQGDGKFHLLPTGELLVHSLEFSDQIH 205


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -1

Query: 313 FFFFXX*SGSNKIHLFGQPNIVLNRKKFTDSVN 215
           F+ +    G  K HL     ++++  +F+D ++
Sbjct: 173 FYIYPSLQGDGKFHLLPTGELLVHSLEFSDQIH 205


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 422 RPVNCNTTP 396
           RP++C+TTP
Sbjct: 656 RPISCHTTP 664


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 464 GNPQGFPXXDVVKRRPVNCNTTPY 393
           G PQGFP   +V     N    PY
Sbjct: 630 GQPQGFPLQFLVVISSSNPLNVPY 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,376
Number of Sequences: 438
Number of extensions: 976
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)