Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D02f
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1GPF9 Cluster: Periplasmic protein-like protein precur...    31   6.6  
UniRef50_A0NPD2 Cluster: Transcriptional regulator, TetR family ...    31   6.6  
UniRef50_A0AWE4 Cluster: Putative uncharacterized protein; n=1; ...    31   8.7  

>UniRef50_Q1GPF9 Cluster: Periplasmic protein-like protein
           precursor; n=1; Sphingopyxis alaskensis|Rep: Periplasmic
           protein-like protein precursor - Sphingopyxis alaskensis
           (Sphingomonas alaskensis)
          Length = 346

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 215 LENSSVNRPATTSEVPGRG*VLPTESVHLSFTCS 114
           ++   +NRPAT + +P R  + P   + LSFT S
Sbjct: 79  MQQQGINRPATVNTIPDRRALEPASRMPLSFTAS 112


>UniRef50_A0NPD2 Cluster: Transcriptional regulator, TetR family
           protein; n=1; Stappia aggregata IAM 12614|Rep:
           Transcriptional regulator, TetR family protein - Stappia
           aggregata IAM 12614
          Length = 189

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 131 DELILSAILILDQELRTWLRDDLRKSSP 214
           +ELIL+A+   D++ R WL  ++ K+SP
Sbjct: 49  EELILAALNRRDEQFRNWLMSEMEKASP 76


>UniRef50_A0AWE4 Cluster: Putative uncharacterized protein; n=1;
           Arthrobacter sp. FB24|Rep: Putative uncharacterized
           protein - Arthrobacter sp. (strain FB24)
          Length = 539

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 292 KAEKLKEYLSSNGRKKQGELITAXLKLKPENKPRANDE 405
           KAEKL E L ++   ++  +ITA + +   +KP A++E
Sbjct: 212 KAEKLAEQLMADSHNRRLNMITALITIVRNSKPSAHEE 249


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,168,952
Number of Sequences: 1657284
Number of extensions: 6006589
Number of successful extensions: 13158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13156
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)