Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D02f
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   1.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   3.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.9  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   7.8  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    24   7.8  

>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 160 DEYCRQNQFIYPSHVVIGHCHY 95
           D++C+  +  YP H V  HCH+
Sbjct: 35  DKFCKTQESTYPIHFV--HCHF 54


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 146 SAILILDQELRTWLRDDLRKSSPS 217
           S + +LD EL++WL+   ++S P+
Sbjct: 117 SNLKLLDSELKSWLKAQKKRSVPN 140


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 386 LFSGFNFXCAVISSPCFFLPFDDKYS 309
           +F GF+    VIS P FFL     YS
Sbjct: 12  VFVGFSLCTLVISVPFFFLQMTPFYS 37


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 277 EQIDPKAEKLKEYLSSNGRKKQGELITAXLKLKPEN 384
           +++D K ++ + +   NG + Q    +  LK+ PEN
Sbjct: 96  DEVDKKEKRRRRF--ENGSRSQNNAKSEELKVNPEN 129


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 128 IDELILSAILILDQELRTWLRDDLRKSSPSWPYKSTQRRNF 250
           +DE  L A L   Q+  +WL D      PS+   S +  NF
Sbjct: 158 VDEEELDAELEALQQESSWLGDQSTAEKPSYLMPSNELPNF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,360
Number of Sequences: 5004
Number of extensions: 26083
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)