Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D02f
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    28   3.2  
04_03_0504 + 16616026-16616137,16616613-16616768,16616884-166170...    27   4.3  
06_02_0040 + 10882897-10884744,10885568-10885666                       27   5.6  
04_03_0220 - 12818723-12818731,12818923-12819232,12845625-12845737     27   5.6  

>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 224 TANLENSSVNRPATTSEVPGRG*VLPTESVHLSF 123
           T++  +S +N    T+  PGRG VLP E +++SF
Sbjct: 879 TSDRSHSYINAAGRTA--PGRGMVLPFEPLYMSF 910


>04_03_0504 +
           16616026-16616137,16616613-16616768,16616884-16617045,
           16618152-16618480
          Length = 252

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 404 SSFARGLFSGFNFXCAVISSPCFFLPF 324
           ++FARG+ S  NF   V SSP   L F
Sbjct: 24  ANFARGMLSSLNFHVIVYSSPVNALVF 50


>06_02_0040 + 10882897-10884744,10885568-10885666
          Length = 648

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 202 EEFSKLAVQINTTXXXXXXXXXXXGEQIDPKAEKLKEYLSS 324
           E+  +LAVQ N T            + +DP   K KE ++S
Sbjct: 322 EQIDQLAVQYNLTDFTSGFRHFLISQSVDPSGAKGKELITS 362


>04_03_0220 - 12818723-12818731,12818923-12819232,12845625-12845737
          Length = 143

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 216 LGELFRKSSRNHVRSSWSRMSIADRI 139
           +GE F+ S +  +RSSWS   I D +
Sbjct: 73  VGEDFKASKKQAIRSSWSASIIRDEL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,611
Number of Sequences: 37544
Number of extensions: 170336
Number of successful extensions: 343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)