Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D02f
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81530-7|CAB04311.2|  292|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z78198-4|CAB01570.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    27   6.8  
D87850-1|BAA13470.1|  316|Caenorhabditis elegans elongation fact...    27   6.8  

>Z81530-7|CAB04311.2|  292|Caenorhabditis elegans Hypothetical
           protein F46A8.10 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 108 PMTTCEG*MN*FCRQYSSSTRNFGRGCGTIYG 203
           P+  C    + F RQ+  S RNF   C  I+G
Sbjct: 116 PLLYCMERSSFFARQHQGSQRNFAMQCMDIFG 147


>Z78198-4|CAB01570.1|  316|Caenorhabditis elegans Hypothetical
           protein F55C5.5 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 TDSVGNTHPRPGTSDVVAGRF 198
           T   G +HP+ GT D+  GRF
Sbjct: 188 TTLFGASHPKDGTDDIPMGRF 208


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 389 GLFSGFNFXCAVISSPCFFLPFDDKYSFSFSAL 291
           GL +G +F    I + CF   FD+   + F  L
Sbjct: 122 GLVNGTSFLLRNIEAECFTYSFDESQEYEFQTL 154


>D87850-1|BAA13470.1|  316|Caenorhabditis elegans elongation factor
           Ts homologue protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 TDSVGNTHPRPGTSDVVAGRF 198
           T   G +HP+ GT D+  GRF
Sbjct: 188 TTLFGASHPKDGTDDIPMGRF 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,049,064
Number of Sequences: 27780
Number of extensions: 149873
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)