Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   5.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   5.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.8  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   6.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.0  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -2

Query: 223 NTTIVFLG-HNIFILKSQALVFLTNIHFKFRIKN--YVKSLIIVY 98
           N+    LG H ++I+K   L  +T+IH   RIK+  +V++ +++Y
Sbjct: 507 NSQAALLGKHYVYIVKKN-LELITSIHETIRIKSAVWVENNVLLY 550


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 83  INFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNI 196
           + FLK N +   NII  +  K D   E   LTL++ NI
Sbjct: 233 LEFLKTNMWAYANIISTACVKDDESCEKIRLTLENTNI 270


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 323  TVAICIRPMYSPYQNRKI*HFLNATIC*RKFCVQHDDSIS 204
            T+A+C+ P +S    +K+ +  +  +  R+ C + DD  S
Sbjct: 1290 TIALCLLPRFSYICLQKLFYPRDIDLLRRRLCAKSDDETS 1329


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 387 ISLGYPLTTNLSLVKLNPNVSYCG 316
           IS   PL   L   +LNP   YCG
Sbjct: 423 ISYSLPLVCRLLFNRLNPGKFYCG 446


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 426 PLTGNEGSYSNSNISLG 376
           P+T NEG   N NI LG
Sbjct: 438 PVTNNEGRQENGNILLG 454


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 438 SNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNP 334
           +N  P +GN GS +++++S+  PLT + S +   P
Sbjct: 172 ANSSP-SGNAGSNASASMSVPPPLTPSASTINDQP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,109
Number of Sequences: 5004
Number of extensions: 45086
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)