Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331D01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 92 2e-19
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 83 1e-16
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 80 9e-16
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 41 7e-04
08_01_0265 + 2148255-2150219,2150735-2150812 31 0.56
05_07_0284 - 28943527-28943625,28944417-28944785 30 0.98
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 2.3
08_02_0890 + 22309061-22309086,22309172-22309253,22309349-223094... 29 3.0
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 29 3.0
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 27 9.1
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 92.3 bits (219), Expect = 2e-19
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = +2
Query: 221 VEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEF 397
V IF NRSL++ N+ GFDMDYTLA+YK +E L ++ T E+LV GYP E+L +
Sbjct: 79 VGKEIFCNRSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEELLTW 138
Query: 398 EYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGF 505
++D + VRGL D GN+LK+D + + V HGF
Sbjct: 139 QFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGF 174
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/85 (45%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 233 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDP 409
I+VN+++ L++++ YGFD DYTL+ Y S + L ++L K+ LV + YP L++EYD
Sbjct: 81 IYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDH 139
Query: 410 SFPVRGLWFDTLYGNLLKVDAYGNI 484
FP+RGL++D L G LLK+D +G+I
Sbjct: 140 GFPIRGLYYDRLKGCLLKLDFFGSI 164
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 80.2 bits (189), Expect = 9e-16
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +2
Query: 230 RIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 409
+IF +R++++E++K GF M+YTL YK +E L + K+RLV YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYKVT-FENLAYVEAKKRLVNGKYPEKILEWNYNS 439
Query: 410 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHG 502
+RGL D GN++KVD Y N+ + HG
Sbjct: 440 EHMIRGLIIDKKKGNIIKVDHYNNVKMSYHG 470
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 371 GYPREILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFL 514
G+P + LEF DP +RGL D GNL+K D +G I +HG + L
Sbjct: 51 GFPVDDLEF--DPDLVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQML 96
>08_01_0265 + 2148255-2150219,2150735-2150812
Length = 680
Score = 31.1 bits (67), Expect = 0.56
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 95 KINNY-QRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYY---RRVEHRIFVNRSLHLE 262
KINNY + LN+ NS + +V K L + I + + R+ +HR F SLH +
Sbjct: 520 KINNYVELLNLYINSGRQTEVSKVVNTLKRRGLCIHAACSWITVRKKDHRFFFKDSLHPQ 579
Query: 263 NVKFYGFDMDYTLAEYKSPQY 325
+ + Y +D L E K Y
Sbjct: 580 SSEIYR-KLDSLLKEIKQLGY 599
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 441 VSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLY 307
+ + PL G +G Y N + +P T + S + NP ++ ++Y
Sbjct: 111 LDRRSPLRGVQGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 245 RSLHLENVKFYGFDMDYTLAEYKSPQYETLG 337
R LHLE+V+F G DYTL + P E LG
Sbjct: 300 RELHLEHVRFNG---DYTLDDAMLPLLEYLG 327
>08_02_0890 +
22309061-22309086,22309172-22309253,22309349-22309441,
22309526-22309720
Length = 131
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFD--TLYGNLLKVDAYGN 481
YK P L E L V G R EF Y PS P WFD TL + + + +
Sbjct: 38 YKQPNLSNLCGYYVCEMLRVCGRYRT--EFTYLPSIPYNASWFDQKTLINLCVDLCRFIH 95
Query: 482 ILVCVHGFEF 511
+C H EF
Sbjct: 96 RDICNHLEEF 105
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 161 ENECLTLQDKNIMSKKYYRRV-EHRIFVNRSLHLENVKFYGFDMDYTLAEYKS 316
+NE ++DK++ +K RR +++I + + K D+DYTL +++S
Sbjct: 128 QNEVTAIKDKDVYKQKLKRRASQYKIKILNPCR-KGKKLLVLDIDYTLFDHRS 179
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 134 SKFKMDVCKENECLTLQDKNIMS 202
SKF++ +CK C+ L D +++
Sbjct: 567 SKFRLSICKAVACMLLHDSKVLA 589
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,350
Number of Sequences: 37544
Number of extensions: 224318
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -