Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...   140   4e-34
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...   138   2e-33
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    68   7e-21
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    32   0.22 
AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    32   0.29 
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    31   0.66 
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    31   0.66 
AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical...    30   0.87 
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 proteas...    27   6.2  
AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 proteas...    27   6.2  
AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score =  140 bits (340), Expect = 4e-34
 Identities = 62/104 (59%), Positives = 75/104 (72%)
 Frame = +2

Query: 209 YYRRVEHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREI 388
           Y R    R+FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI
Sbjct: 8   YKRNPAERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEI 67

Query: 389 LEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKH 520
             F+YDP FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK+
Sbjct: 68  KSFKYDPIFPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKN 111


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score =  138 bits (335), Expect = 2e-33
 Identities = 60/99 (60%), Positives = 74/99 (74%)
 Frame = +2

Query: 224 EHRIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEY 403
           + R+FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+Y
Sbjct: 10  DERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKY 69

Query: 404 DPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKH 520
           DP FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK+
Sbjct: 70  DPIFPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKN 108


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 67.7 bits (158), Expect(2) = 7e-21
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +2

Query: 287 MDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRG 427
           MDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVRG
Sbjct: 1   MDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVRG 47



 Score = 50.0 bits (114), Expect(2) = 7e-21
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 410 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKH 520
           +F   GLWF+  +GNLLKVD +GNIL  +HG  FLK+
Sbjct: 86  NFLYLGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKN 122


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 344 LTKERLVVKGYPREILEF-EYDPSFPVRGLWFDTLYGNLLKVD--AYGNILVCVHGFEFL 514
           + K +   K   RE+L F E +PS P+  L F+T++G +L++    Y  I  C    E L
Sbjct: 325 IEKNQFNRKACARELLAFAEENPSVPIGFLIFETIFGQMLRLPHAPYPAIFHCSLVLELL 384

Query: 515 K 517
           K
Sbjct: 385 K 385


>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 211 VFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYF 95
           V+LG   F +K+++ V+L+ ++ +F +      LI++YF
Sbjct: 14  VYLGSAYFYMKTESFVYLSLVYIQFSLFFLTSILIVIYF 52


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 71  FRCTI-NFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHR-IFVN 244
           FR T+ N    N      I F  KF    C+ N CL    K  M K Y R++    +   
Sbjct: 52  FRRTVKNQFTCNANNDCVISFEKKFTCRACRYNNCL----KAGMRKDYIRKINSNYVPKQ 107

Query: 245 RSLHLENVKFYGFDMDYTLAEYKSPQYETLGFN-LTKERLVVKGYPREILEF 397
           + ++++  +  G     + +   SP    +    + K   ++K YP+E+L+F
Sbjct: 108 KCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQELLQF 159


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 71  FRCTI-NFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHR-IFVN 244
           FR T+ N    N      I F  KF    C+ N CL    K  M K Y R++    +   
Sbjct: 33  FRRTVKNQFTCNANNDCVISFEKKFTCRACRYNNCL----KAGMRKDYIRKINSNYVPKQ 88

Query: 245 RSLHLENVKFYGFDMDYTLAEYKSPQYETLGFN-LTKERLVVKGYPREILEF 397
           + ++++  +  G     + +   SP    +    + K   ++K YP+E+L+F
Sbjct: 89  KCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQELLQF 140


>AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical
           protein T24E12.2 protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +2

Query: 62  QCMFRCTINFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHRIFV 241
           +C  +C I    +     +NII  ++ +      N+ L L++ N+         + +IF+
Sbjct: 37  ECYIKCEIQRADLEEINAMNIIEINRLRESNTHANKALRLENSNLRDHVLQLTNDCQIFL 96

Query: 242 NRSLHLE 262
           N+  +LE
Sbjct: 97  NKCSNLE 103


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -2

Query: 217 TIVFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYFQKIYSTSEHALFLLSTVPL 38
           +++FL H  +++    L   T  +F FRI N+  S+I ++ +  Y  S  A+ LL  + +
Sbjct: 412 SLIFLEHVFWVISLNTLFTATFAYFPFRIGNWFLSVIGLHGKISYFPSIVAM-LLGYIQI 470

Query: 37  ANIWNKIFTIL 5
           A I   I  I+
Sbjct: 471 AIITYVIHQIM 481


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 440 TLYGNLLKVDAYGNILVCVHGFEFL 514
           T YG++      G +LVCV+GF F+
Sbjct: 330 TGYGSIAPESTLGQVLVCVYGFIFV 354


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 325 VLWRFVFGQCIVHIKTVKFNIF 260
           V WR VFG  +V++  ++F +F
Sbjct: 152 VFWRIVFGVSVVYLMLLQFTLF 173


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 147 WMFVRKTSA*LFKIKILCPRNTIVVLNTEFSLTDRCI*KMLNFTV 281
           WM+V   S  + ++ +      I  + T+F +T+  + KM++FTV
Sbjct: 230 WMYVEDCSEAITRVALEGTLGEIYNIGTDFEMTNIELTKMIHFTV 274


>AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 protease
           suppressor 6 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 290 DYTLA-EYKSPQYETLGFNLTKERLV-VKGYPREILEFEYDPSFPVRGLWFDTLY 448
           D+ L+ +YK+     +  +LT ERL   +G  R++ EF+ D +FP + L  +T Y
Sbjct: 85  DFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDY 139


>AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 protease
           suppressor protein 6 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 290 DYTLA-EYKSPQYETLGFNLTKERLV-VKGYPREILEFEYDPSFPVRGLWFDTLY 448
           D+ L+ +YK+     +  +LT ERL   +G  R++ EF+ D +FP + L  +T Y
Sbjct: 85  DFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDY 139


>AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical
           protein Y71G12B.18 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 112 LIIVYFQKIYSTSEHALFLLSTVPLANIWNKIFT 11
           ++++Y Q   + S+    L   VPL N WNK  T
Sbjct: 22  IVLLYGQTTSTDSDELTELRPNVPLFNSWNKCMT 55


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 444 NVSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLYS 304
           N+S+   +T +  S+ +     G PLT   + V  NP++S C D YS
Sbjct: 2   NISSN--ITTSFSSFLDDLCGEGIPLTILSAPVTCNPSISSCPDGYS 46


>AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical
           protein K02E7.4 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 157 TNIHFKFRIKNYVKSLIIVYFQKIYSTSEHALFLLST 47
           TN+ F  R+ N+V   +  + Q +    ++ LF+ ST
Sbjct: 117 TNVDFSERLDNFVSEFLKTHVQMLSVEEQYKLFMNST 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,262
Number of Sequences: 27780
Number of extensions: 244241
Number of successful extensions: 664
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)