Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.82 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   1.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +2

Query: 275 YGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFDTLYGN 454
           Y FD+DY  +E + P         T +  +  G     +    DP+  V G+W + L  N
Sbjct: 549 YLFDLDYNESEEQCPY--------TVDAAIY-GNISHFINHSCDPNLAVYGVWINCLDPN 599

Query: 455 LLKV 466
           L K+
Sbjct: 600 LPKL 603


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 138 NLKWMFVRKTSA*LFKIKILCPRNTIVVLNTEFSLT 245
           N KW F    +  + K+   CP +T  ++  EFS++
Sbjct: 214 NSKWDFKVIKATKVLKMYACCPNDTYPMIVYEFSIS 249


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -3

Query: 459 SKFPYNVSNQRPLTGN---EGSYSNSNISLGYPLTTNLSLVKL--NPNVSYCGD 313
           SK P  +SN  PL+ N     +Y+N N      L  N++ ++    P   YCG+
Sbjct: 76  SKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGN 129


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 308 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFP 418
           Y +PQ + L     +++    GY   +    YDP  P
Sbjct: 110 YGNPQQQQLAAETQQQQQHNNGYASPMSTSSYDPYSP 146


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 449 GNLLKVDAYGNILVCVHGF 505
           G+++     GNILVCV  F
Sbjct: 49  GSIIVGTVIGNILVCVAVF 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,772
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)