Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    33   0.034
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    29   0.32 
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    29   0.42 
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    28   0.73 
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    27   2.2  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   6.8  
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   6.8  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.0  

>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 327 LQRHYLGFSEGFVMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNR 479
           ++  Y+   EGF++VY+     S D +    + I R KDK    ++++ N+
Sbjct: 72  MREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANK 122


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 129 LIYGNVNLKSCFYPTIEDIYVANIETDRGPKERVCFYDTAGLE 257
           +++        + PT+ + YVA++E D G    +  +DTAG E
Sbjct: 24  IVFSKGTFPEVYVPTVFENYVADVEVD-GRHVELALWDTAGQE 65


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 129 LIYGNVNLKSCFYPTIEDIYVANIETDRGPKERVCFYDTAGLE 257
           +++        + PT+ + YVA++E D G    +  +DTAG E
Sbjct: 24  IVFSKGTFPEVYVPTVFENYVADVEVD-GRHIELALWDTAGQE 65


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 333 RHYLGFSEGFVMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNRT 482
           +H +G   G+V+VY      S +++  ++  I  +   + V I+V+GN++
Sbjct: 73  KHSIGI-HGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKS 121


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 234 FYDTAGLEPPLTGEFKGPPQSPTMQLTANQVLQRHYLGFSEGFVMVYDTARPESLDVLMY 413
           FY T  +E     E  GP +     L    V+ + YL  SEG+  V      E  D + Y
Sbjct: 95  FYKTIEVEGWTFNE-SGPNEKDRQLLVEFDVVIKEYLNLSEGYRNVISNITKEMGDGMAY 153

Query: 414 LKKDIDRN 437
                ++N
Sbjct: 154 YASLAEKN 161


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 237 YDTAGLEPPLTGEFKGPPQS--PTMQLTANQVLQ 332
           Y  + LEP  +  F  PP+S  PT+    N V Q
Sbjct: 177 YSDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQ 210


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +3

Query: 324 VLQRHYLGFSEGFVMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNRTGPDDPNS 503
           +   +Y G + G ++VYD    +S + +    ++IDR    + V  L++GN++   D   
Sbjct: 73  ITSSYYRG-AHGIIIVYDVTDQDSFNNVKQWLQEIDRYA-VEGVNRLLVGNKSDMVDKKV 130

Query: 504 LE 509
           +E
Sbjct: 131 VE 132


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 384 RPESLDVLMYLKKDIDRNKDKKEVVILVIGNRTGPDDPNSLEN 512
           RP+ L     LKK     K K+E    + GN + P   N  EN
Sbjct: 5   RPQGLRAAASLKKQQQLEKQKQEASYELSGN-SSPSKENGSEN 46


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 114 AILEQLIYGNV--NLKS----CFYPTIEDIYVANIETDRGPKERVCFYDTAG 251
           AI+E L Y  +  +L      CF   I    + +I T +  K+RV F  T+G
Sbjct: 504 AIMENLSYSEIKDDLNDAKYICFDGNISPSLMLDITTSKSSKQRVVFEPTSG 555


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 406 STSSDSGRAVS*TMTKPSEKPR 341
           STSS S  +++  M  PSEKPR
Sbjct: 94  STSSRSRNSLNLDMKDPSEKPR 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,516
Number of Sequences: 5004
Number of extensions: 41159
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)