Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0181 - 13884007-13884767,13885263-13885329 30 1.3
03_01_0365 - 2839190-2839251,2839637-2839694,2839946-2840032,284... 29 1.7
06_03_0775 - 24510624-24510655,24511228-24512179 29 3.0
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 3.0
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 28 4.0
06_03_1210 + 28442253-28442967,28443338-28443405 28 4.0
01_05_0430 + 22078651-22078677,22079269-22079356,22079669-220799... 28 4.0
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 28 5.2
07_03_1397 + 26269186-26269525,26269727-26269932,26270225-262703... 28 5.2
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 28 5.2
03_02_0272 - 7034043-7034800,7034884-7034923 28 5.2
01_06_1290 - 36023353-36024096 28 5.2
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381 27 6.9
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206... 27 9.1
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721... 27 9.1
>10_07_0181 - 13884007-13884767,13885263-13885329
Length = 275
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 316 AVSCIVGDCGGPLNSPVSGGSKPA 245
A SC+ GDCGG L + G+ PA
Sbjct: 101 AASCLTGDCGGRLACNGTAGAPPA 124
>03_01_0365 -
2839190-2839251,2839637-2839694,2839946-2840032,
2840117-2840206,2840575-2840650,2840877-2840971,
2841090-2841173,2841270-2841343,2841803-2841827
Length = 216
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 363 VMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNR 479
V+VYD PES Y K++ ++ +++++++GN+
Sbjct: 99 VVVYDITSPESFSKAQYWVKELQKH-GSPDIIMVLVGNK 136
>06_03_0775 - 24510624-24510655,24511228-24512179
Length = 327
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 155 IMFLSHDRRHLCGQHRNRSRSERTRLFLRHSGLG 256
I ++ HDR HL + R+RSRS + SG G
Sbjct: 56 INYIDHDRPHLFSRRRSRSRSRSSSSPAASSGGG 89
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 122 RAVNLRECKFEIMFLSHDRRHLCGQHRNRSRSERTRLF 235
R ++RE I L H R L G++R +RS R +LF
Sbjct: 710 RETDVRELPETITRLGHMRHLLSGRYRYYTRSHRVKLF 747
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 249 GLEPPLTGEFKGPPQSPTMQLTANQVLQRHYLGFSE 356
G+E P T + KGPP + + + +Q L H LG +E
Sbjct: 139 GVENPNTQKGKGPPDATSYDIAEDQ-LASHELGMNE 173
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 307 CIVGDCGGPLNSPVSGGSKPA 245
C GDCGG L +GG+ PA
Sbjct: 90 CATGDCGGALYCNGAGGAPPA 110
>01_05_0430 +
22078651-22078677,22079269-22079356,22079669-22079929,
22080693-22080950,22081036-22081160,22082375-22082851,
22082937-22083848
Length = 715
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 270 GEFKGPPQSPTMQLTANQVLQRHYLGF--SEGFVMVYDTARPESLDVLMYLKKDIDRN 437
G + P M++T NQ+L GF +EG +++ T PESLD + DR+
Sbjct: 335 GGSRNPKDQQYMKMTLNQLLVE-LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 391
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 310 SCIVGDCGGPLNSPVSGGSKPA 245
SC GDCGG L + G+ PA
Sbjct: 372 SCATGDCGGVLRCNGAAGATPA 393
>07_03_1397 +
26269186-26269525,26269727-26269932,26270225-26270327,
26270570-26270577
Length = 218
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 324 VLQRHYLGFSEGFVMVYDTARPESLDVLMYLKKDIDRNKDKKEVVILVIGNRT 482
V +Y G + G ++VYD +R ++ D + ++ + D V ILV GN+T
Sbjct: 79 VTSAYYRG-AVGALLVYDISRRQTFDSVGRWLNELHTHSDMNVVTILV-GNKT 129
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 180 DIYVANIETDRGPKERVCFYDTAGLEP 260
D+YV ++ D+GP+ R + + A L P
Sbjct: 503 DLYVEGMDEDKGPQSRKLYLELANLWP 529
>03_02_0272 - 7034043-7034800,7034884-7034923
Length = 265
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 337 CRWSTWLAVSCIVGDCGGPLNSPVSGGSKP 248
C S +++C+ GDCGG ++ + GG+ P
Sbjct: 86 CAPSGTASLACVTGDCGGAVSCSL-GGAPP 114
>01_06_1290 - 36023353-36024096
Length = 247
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 307 CIVGDCGGPLNSPVSGGSKPA 245
C GDCGG L GG+ PA
Sbjct: 93 CATGDCGGRLQCAGLGGAAPA 113
>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
Length = 383
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 316 AVSCIVGDCGGPLNSPVSGGSKPA 245
A +C GDCGG L +G + PA
Sbjct: 104 AAACQTGDCGGRLECGGTGATPPA 127
>01_06_1572 +
38319544-38319849,38320427-38320513,38320584-38320676,
38321491-38321567,38321974-38322562,38322701-38322794,
38322884-38322996,38323438-38323524,38323842-38323964,
38324058-38324192,38324437-38324484,38324993-38325094,
38325321-38325716
Length = 749
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 180 DIYVANIETDRGPKERVCFYDTAGLEP 260
D+YV ++ D+GP+ R + + A L P
Sbjct: 564 DLYVEGMDEDKGPQSRKLYVELAELWP 590
>01_05_0429 +
22070636-22070662,22071490-22071577,22071908-22072168,
22072925-22073161,22073251-22073375,22074093-22074569,
22074655-22075569
Length = 709
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 270 GEFKGPPQSPTMQLTANQVLQRHYLGF--SEGFVMVYDTARPESLDVLMYLKKDIDRN 437
G + P M++T NQ+L GF +EG +++ T P+SLD + DR+
Sbjct: 328 GGSRNPKDQQYMRMTLNQLLVE-LDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRH 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,351
Number of Sequences: 37544
Number of extensions: 270744
Number of successful extensions: 730
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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