Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331C07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.56 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   5.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 LMVITKCFIF-SYFINVQCYMKAGKGFRFF 213
           L+ I+  F+F +Y +++ CY+K   GF FF
Sbjct: 33  LLYISIIFLFLNYVVDIVCYVKNYNGFSFF 62


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 328 NYNR*LN*LKTITMSFTNVFYFALKTT 248
           NYN     L TITMS +N +YFA+  T
Sbjct: 190 NYNPYRINLYTITMSPSNPYYFAIGGT 216


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 120 LIYFIKVLSTF---FYILCCIFSFNITLLYSFLF 28
           + +F  + S+F   F+ L  + SF   LLYSF+F
Sbjct: 4   MFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIF 37


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -3

Query: 234 PAKQTFREKSKAFACLHVTLHIYEI*KYKTFSYYHKNLLIYFIKVLSTFFYILCCIFSFN 55
           P K+  + ++K+   +   +H + I     F  YH+ +L + +  +S         FSF 
Sbjct: 128 PKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187

Query: 54  ITLLYSFL 31
              L SF+
Sbjct: 188 SFPLLSFI 195


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 153 YKTFSYYHKNLLI-YFIKVLSTFFYILCCI 67
           Y    Y +KN+L+ Y + ++  ++Y+L C+
Sbjct: 48  YDRICYDYKNILLKYELFIIYYYYYLLICL 77


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 117 IYFIKVLSTFFYILCCIFSFNI 52
           I F   LS   Y++C +FS NI
Sbjct: 451 IVFFGYLSWIGYVICFVFSLNI 472


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 225 QTFREKSKAFACLHVTLHIYEI*KYKTFSYYHKNL 121
           Q FR++      LH TL  + +  ++ FS + K L
Sbjct: 561 QDFRQRFAILKALHATLETWYVTVHRGFSVFEKVL 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,961
Number of Sequences: 5004
Number of extensions: 38899
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)