Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C06f
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 162 2e-41
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 111 8e-26
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 82 5e-17
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 74 1e-14
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 74 1e-14
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 74 1e-14
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 73 2e-14
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 72 4e-14
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 71 7e-14
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 69 4e-13
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 66 4e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 64 9e-12
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 64 9e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 62 3e-11
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 62 3e-11
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 62 5e-11
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 60 2e-10
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 53 2e-08
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 29 0.39
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.69
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 1.2
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 27 1.6
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 2.8
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 3.7
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 25 6.4
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 162 bits (394), Expect = 2e-41
Identities = 70/119 (58%), Positives = 99/119 (83%)
Frame = +1
Query: 133 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 312
+REYK+VV+G GGVGKSALT+Q +Q FV++YDPTIEDSYRK+ E+DG+ +L++LDTAG
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAG 65
Query: 313 TEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
E+++AMR+ YM+ G+GF+LVY+IT++S+F+++ +QILRVKD P+VLV NK D
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCD 124
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 111 bits (266), Expect = 8e-26
Identities = 53/119 (44%), Positives = 84/119 (70%)
Frame = +1
Query: 133 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 312
++ +I VLGS VGKS+LTVQ+V+ FVE Y PTIE+++ K ++ GQ+ EI+DTAG
Sbjct: 4 IKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAG 63
Query: 313 TEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
++++ + + G+VLVYSIT++S+F ++ +R++IL T VP+V+VGNK+D
Sbjct: 64 QDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSD 122
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 81.8 bits (193), Expect = 5e-17
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Frame = +1
Query: 142 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 318
+K++++G GVGKS L ++F + E Y TI ++ + E++G+ L+I DTAG E
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 319 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
+F + Y + G ++VY +T Q +FN+++ ++I R V +LVGNK+D
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA-VEGVNRLLVGNKSD 124
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 74.1 bits (174), Expect = 1e-14
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 321
K+V+LG GVGK+ L QFV F +Y TI D K V VD + L++ DTAG E+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 322 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL--RVKDTTDVPMVLVGNKTD 489
F ++ + + V+VY++ +F+ +++ R++ L +D P ++VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 73.7 bits (173), Expect = 1e-14
Identities = 41/123 (33%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Frame = +1
Query: 133 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 309
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 310 GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
G E+F ++ Y+++ ++VY IT ++F + + E + R + DV +VLVGNKTD
Sbjct: 69 GQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV-RAERGDDVIIVLVGNKTD 127
Query: 490 XSE 498
++
Sbjct: 128 LAD 130
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 73.7 bits (173), Expect = 1e-14
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 324
K+V++G G GK+ L + F +G F E Y PT+ ++Y VEVDG+ L + DTAG E +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 325 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTTDVPMVLVGNKTD 489
+R L + ++ +S+ A + +++Q+ ++L +++P++LVG K D
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHF--CSNLPILLVGCKVD 121
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 72.9 bits (171), Expect = 2e-14
Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 321
K++++G GVGKS L ++F + F + TI ++ + +E+DG++ L+I DTAG E+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 322 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTDXSE 498
F + Y + G +L+Y +T + +F++++ + + +V +L+GNK D +
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNV-EQHASENVYKILIGNKCDCED 128
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 72.1 bits (169), Expect = 4e-14
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 321
K+++LG GVGK+++ Q+V F + Y TI D K+V VD + L++ DTAG E+
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 322 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTTDVPMVLVGNKTDX 492
F ++ + + VLVY + +F L R++ L + P +L+GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 493 SE 498
E
Sbjct: 130 EE 131
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 71.3 bits (167), Expect = 7e-14
Identities = 41/118 (34%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Frame = +1
Query: 142 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 318
+K V++G GVGKS L ++F + F + TI + + + +D ++ +I DTAG E
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 319 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTTDVPMVLVGNKTD 489
++ A+ Y + G ++VY IT QS+F+++ + L+E LR +++ ++LVGNKTD
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE--LREHADSNIVIMLVGNKTD 126
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 68.9 bits (161), Expect = 4e-13
Identities = 35/116 (30%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 324
K+V++G G GK+ L + F +G F E Y PT+ ++Y VEVDG+ L + DTAG E +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 325 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTTDVPMVLVGNKTD 489
+R L + ++ +++ + + +++Q+ ++L + +P++LV K D
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHF--CSSLPILLVACKAD 121
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 65.7 bits (153), Expect = 4e-12
Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 142 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 318
+K+V++G GG GK+ + + G F +KY T+ + + + + + DTAG E
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 319 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTDXSE 498
+ +RD Y GQ ++++ +T++ T+ ++ ++RV + ++P+VL GNK D E
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCE--NIPIVLCGNKVDVKE 127
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 64.5 bits (150), Expect = 9e-12
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEIL--DTAGTE 318
K+VV+G GG GK+ L + F G F E+Y PT+ ++Y + ++E+ DTAG E
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 319 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTTDVPMVLVGNKTD 489
++ +R L N +L +SI ++ N++ + ++ T P+VLVG K D
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRT--PIVLVGLKAD 131
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 64.5 bits (150), Expect = 9e-12
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 324
KIV+LG G GK++L F +G F + Y+PTI ++Y + VDG L + DTAG E++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 325 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV-KDTTDVPMVLVGNKTD 489
+R L + ++ +++ ++ + ++ + + + V + V +VLV K D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENV--ITKWLPEVSSNCPGVKLVLVALKCD 128
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 62.5 bits (145), Expect = 3e-11
Identities = 34/119 (28%), Positives = 60/119 (50%)
Frame = +1
Query: 133 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 312
M K VV+G G VGK+ L + + F Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60
Query: 313 TEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
E + +R L F++ +S+T+ ++F ++++ + VP ++VG + D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVH-HHCPGVPCLIVGTQID 118
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 62.5 bits (145), Expect = 3e-11
Identities = 33/115 (28%), Positives = 59/115 (51%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 324
K+VV+G G GK++L F G F +Y PT+ ++Y VDG+ L + DTAG E++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 325 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
+R + ++ ++I + + ++ + + +VP +LVG K D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTL-CPNVPFILVGMKAD 123
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 62.1 bits (144), Expect = 5e-11
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCM-LEILDTAGTE 318
K+V+LG VGKS+L ++FV+ F + + TI ++ Q + +D + LEI DTAG E
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 319 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTDXSE 498
++ ++ +Y +N ++VY IT ++ + +++ R + + + L GNK D ++
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQR-QAPEGIVIALAGNKLDLAQ 134
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 60.1 bits (139), Expect = 2e-10
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDG-----QQCMLEILDTA 309
KIV+ G G GKS L +FV+ + ++ T+ + ++ G ++ L+I DTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 310 GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
G E+F ++ Y + G VLVY +T + +F +L I + +T + +VL G+K+D
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPST-ICVVLAGSKSD 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.2 bits (122), Expect = 2e-08
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = +1
Query: 145 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQ 321
K+ ++G +GK++L V +VQG F E+ T+ ++ K + + + I D G +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 322 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTTDVPMVLVGNKTD 489
F M + + + ++ ++ +ST N +++ Q R + T VP +L+G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ-ARGFNKTAVP-ILIGTKYD 125
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 139 EYKIVVL-GSGGVGKSALTVQFVQGIFVEK 225
++KI+VL G GGVGKS + Q G+ +E+
Sbjct: 60 KHKILVLSGKGGVGKSTFSSQLAWGLSLEE 89
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 0.69
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 133 MREYKIVVLGSGGVGKSALTVQFVQ 207
M+E ++V+ G GVGKS+L +Q
Sbjct: 1 MKEVRVVICGDQGVGKSSLISALIQ 25
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 209 PCTNCTVRADFPTPPLPNTTILYSR 135
P TN T R +P P+PNT + Y+R
Sbjct: 315 PVTNET-RQSYPNLPIPNTPLYYTR 338
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 113 VTQYRE*CASTK*LC*AAEAWESPP*QCNLYKASLSRN-TTQPSKTATGNK 262
+ Y E + + +C +AW PP +L + + N T PS + G K
Sbjct: 210 LASYGEKASDVRYVCLFCKAWNGPPIDKSLPSSEMDSNLQTNPSSISKGKK 260
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 148 IVVLGSGGVGKSALTVQFVQGIFVEK 225
+V+ G GGVGKS++T Q + K
Sbjct: 9 LVLSGKGGVGKSSVTTQLALSLHDSK 34
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 310 LRYPGSRAYIAVHQLPLVSCSCLRWLGRI 224
+ +P SR H LP++ CS L +G I
Sbjct: 65 MSHPSSRKDTMEHGLPIILCSTLMLVGNI 93
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 209 PCTNCTVRADFPTPPLPNTTILYSRIIPYI 120
P +CT++ + T +P T L++ I PY+
Sbjct: 569 PLGSCTMKLNAVTEMMPITNPLFANIHPYV 598
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 6.4
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +1
Query: 148 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT 327
++VLG+GGV AL G V T+ S +++E + ++ T Q+
Sbjct: 169 VLVLGTGGVSTFALQFALAAGANV-----TVTSSSDEKLEFAKKLGATHTINYKKTPQW- 222
Query: 328 AMRDLYMKNGQGFVLVYSITAQST 399
A L M NG G+ V + + T
Sbjct: 223 ASPALKMTNGVGYHHVIEVGGEKT 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,838
Number of Sequences: 5004
Number of extensions: 47270
Number of successful extensions: 167
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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