Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen... 75 6e-15
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 2.2
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 2.2
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 27 2.2
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 5.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 5.2
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 6.8
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 9.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.0
>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
component|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 74.9 bits (176), Expect = 6e-15
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +1
Query: 232 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 408
+ E+R+LKV ++DK+ ++T S F NDLGLDSLD VEV+MA+E+EF +IPD DA+
Sbjct: 34 DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93
Query: 409 RLVRPKDIVQYI 444
+ D + YI
Sbjct: 94 EITSVGDAISYI 105
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 9 NGCCEYFPKCFRW 47
NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 444 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 358
N LDNVF S + L + + YL+ +F FHC+
Sbjct: 64 NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 26.6 bits (56), Expect = 2.2
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +1
Query: 28 FRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTG 207
FR AF R TS + +L Q + + I + A NG + T
Sbjct: 14 FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73
Query: 208 VQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDHVEV 354
+ K+ + EE V + K +DK +TV+ +H + LG + L EV
Sbjct: 74 MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQEEV 123
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +1
Query: 109 LQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKL 279
L+++ + +K +YKS+ ++ + YS+ + K S++ ++ R+ K +K+
Sbjct: 131 LEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 172 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGL-DSLDHV 348
NG P + G++ VQEIE+ +++ KA + SQLT+ +N +SL
Sbjct: 285 NGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKA--RAEESQLTLFVFPINYHSFSESLKQS 342
Query: 349 EVIMAMED 372
E++ ++D
Sbjct: 343 EILETIKD 350
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -3
Query: 510 IQLVQNYEVYIFLLFINIFLVSNVLDNVFWSNQSLCITIR 391
I ++Q Y+V+I ++ I IFL L N+F ++ S IT+R
Sbjct: 47 ISVLQMYKVHIRMVSIYIFL--KALSNIFLAS-SCEITVR 83
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/44 (25%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -3
Query: 519 VSKIQLVQNYEVYIFLLFINIFLVSNVLD--NVFWSNQSLCITI 394
+S++++V+ ++F L +++ L+SN+LD + W ++ L + +
Sbjct: 359 LSRVEVVR-MSGHLFQLRVDVNLISNILDTPDFLWDSEPLLLPL 401
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 334 SLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 444
SLD+ I+ M+ GFEI E + + +I +Y+
Sbjct: 291 SLDYERAILGMKLSCGFEILYNSKENVEKRTEIDEYL 327
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -3
Query: 384 KSKFIFHCHYDLNMVQ*VKTQIIHEV 307
K FI HCH++L+ + ++ ++ +
Sbjct: 90 KRNFILHCHHELSSGELLRNSALYSI 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,536
Number of Sequences: 5004
Number of extensions: 39684
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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