Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical... 125 2e-29
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 100 5e-22
U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical pr... 85 2e-17
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 31 0.66
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 30 1.2
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical... 28 4.7
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 28 4.7
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 28 4.7
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 28 4.7
AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical... 27 8.1
AF067607-5|AAF98612.1| 170|Caenorhabditis elegans Hypothetical ... 27 8.1
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 27 8.1
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 27 8.1
>AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical
protein Y56A3A.19 protein.
Length = 133
Score = 125 bits (302), Expect = 2e-29
Identities = 62/132 (46%), Positives = 85/132 (64%)
Frame = +1
Query: 73 RTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVL 252
R +V+ L TV+++ S ++ L P ++ L+ + +EER++
Sbjct: 3 RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61
Query: 253 KVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDI 432
V YDK+ A +LT+DS F DLGLDSLDHVEV+MAME+EFGFEIPDGDA+R P+DI
Sbjct: 62 LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121
Query: 433 VQYIADKEDIYE 468
QYIADKED++E
Sbjct: 122 FQYIADKEDVFE 133
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 100 bits (240), Expect = 5e-22
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +1
Query: 214 SKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 393
+KL +E+ V+ A +S+++LT+DS F DLGLD LDHVEV+MA+E+EFGFEIP
Sbjct: 165 AKLLQKEVFRFVIVTSSA---ISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEIP 221
Query: 394 DGDAERLVRPKDIVQYIADKEDIYE 468
DGDA+R P+DI+QYIADK D++E
Sbjct: 222 DGDADRFKTPRDILQYIADKVDVFE 246
>U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical
protein F37C12.3 protein.
Length = 145
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Frame = +1
Query: 217 KLSVQEIEERVLKVCKAYDKLSA---SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFE 387
+L+ +++E+RVLK +++D+ A S L +D+ D G DSLD VE++MA+EDEFGFE
Sbjct: 59 QLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEFGFE 118
Query: 388 IPDGDAERLVRPKDIVQYIADKEDIYE 468
IP D+++ +D +YI ++ED+YE
Sbjct: 119 IPLQDSDKFKTIRDAFKYICEREDVYE 145
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.66
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 271 DKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRP-KDIVQYIA 447
+KL + +L + + + LD VE++M++ED G + + D+ LVR +D + +
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVRSVEDTIGVVL 211
Query: 448 DKEDIYE 468
++ D E
Sbjct: 212 EELDSVE 218
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 286 SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIADK 453
SQL D++ ++DLGLDSL VE+ A+E + + + L K +Q +AD+
Sbjct: 2206 SQLNADAN-LSDLGLDSLMGVEIKQALERDHDIVLSMKEIRTLTLNK--LQQLADQ 2258
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 310 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 444
F+ + LD H V +A EDEFG D +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244
>AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical
protein Y47D3B.4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 FRSAFGGLLRRSTTYRTSVTCRLS-TVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYST 204
+ +F +T + +LS +VA Q FST +A YKS+ + H+
Sbjct: 404 YGKSFSSTATVATVFNHFALHKLSPSVAKSQYFSTSEALKLHYKSECPWESRNECHQLEY 463
Query: 205 GVQSKLSVQEIEERVLK 255
V S+ + EER+ K
Sbjct: 464 DVIEDTSLDKYEERLRK 480
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +1
Query: 28 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 195
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 196 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 318
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +1
Query: 28 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 195
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 196 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 318
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +1
Query: 28 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 195
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 196 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 318
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical
protein Y39B6A.39 protein.
Length = 365
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +1
Query: 94 LSTVALQQKFSTIKAAVKIYKSQALQNG------VPQSHRYSTGVQSKLSVQEIEERV-- 249
L+ A+QQ IK + + L N +P S YST + S+++I RV
Sbjct: 155 LTPPAIQQHCQAIKKFCTPFPPELLSNPSATCQHLPISIEYSTYIHQGTSIRDIRSRVVT 214
Query: 250 LKVCKAYDKLSASQL 294
+K+ A KLS +Q+
Sbjct: 215 MKIHVAELKLSENQM 229
>AF067607-5|AAF98612.1| 170|Caenorhabditis elegans Hypothetical
protein C18H7.7 protein.
Length = 170
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 204 CRVPM*LWYPILKGLTFVYFDSGFNCA 124
C +P + +L+G+T ++F G +CA
Sbjct: 8 CSLPFFFFGQMLRGITLLFFSIGLSCA 34
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 519 VSKIQLVQNYEVYIFLLFINI-FLVSNVLDNVFWS 418
+SK+ + +Y Y LLF+ I FL S++ ++F+S
Sbjct: 137 ISKVAKIFDYTDYTLLLFVLILFLFSSIAMSIFFS 171
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 304 SHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIADKED 459
S F+ D+ +D L + A+EDE ++P G+A + R K V +K++
Sbjct: 102 SCFLPDVEMDRLKRD--LQALEDEARLDVPFGNASSMARYKRDVNKDKEKKE 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,917,869
Number of Sequences: 27780
Number of extensions: 229360
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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